Rayan Chikhi
Molecular Biology · 2011–2021
A researcher in the Science corpus: 7 papers; trusts 18 researchers and is trusted by 17 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 184 citations into it; #3,045 of 17,773 by trust here, #4,880 by citations
- Ecology — 61 citations into it
- Genetics — 40 citations into it; #3,275 of 6,854 by trust here, #1,758 by citations
- Plant Science — 38 citations into it
- Artificial Intelligence — 14 citations into it
Whom Rayan Chikhi trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Daniel R. Zerbino
- Mark J. P. Chaisson
- Jared T. Simpson
- David R. Kelley
- Alexey A. Gurevich
- Jason Rafe Miller
- Pavel A. Pevzner
- Jared T Simpson
- Guillaume Marçais
- Ewan Birney
Who trusts Rayan Chikhi overall
- T. Ranallo-Benavidez
- Dinghua Li
- Sergey Nurk
- G. W. Peterson
- Andrey D. Prjibelski
- Dmitry Meleshko
- Gregory W. Vurture
- Paul Medvedev
- Kamil S. Jaron
- Anton I. Korobeynikov
Papers from Rayan Chikhi's perspective
Ordered by how strongly the researchers Rayan Chikhi trusts endorse each paper. Same corpus, a different order for every researcher.
- Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
- An Eulerian path approach to DNA fragment assembly (Proceedings of the National Academy of Sciences of the United States of America)
- De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. (Genome Research)
- Limitations of next-generation genome sequence assembly (Nature Methods)
- Whole-genome re-sequencing. (Current Opinion in Genetics and Development)
- Basic local alignment search tool.
- Short read fragment assembly of bacterial genomes. (Genome Research)
- Aligning multiple genomic sequences with the threaded blockset aligner. (Genome Research)
- ARACHNE: a whole-genome shotgun assembler. (Genome Research)
- A Unifying View of Genome Rearrangements (Workshop on Algorithms in Bioinformatics)
Their papers
- Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species (2013) — 725 citations
- Assemblathon 1: a competitive assessment of de novo short read assembly methods. (2011) — 544 citations
- Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software (2017) — 675 citations
- Space-efficient and exact de Bruijn graph representation based on a Bloom filter (2012) — 415 citations
- Informed and automated k-mer size selection for genome assembly (2013) — 726 citations
- Petabase-scale sequence alignment catalyses viral discovery (2020) — 420 citations
- Critical Assessment of Metagenome Interpretation: the second round of challenges (2021) — 314 citations