Jared T. Simpson
Molecular Biology · Nature Methods · 2011–2018
A researcher in the Science corpus: 14 papers; trusts 16 researchers and is trusted by 43 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 273 citations into it; #1,052 of 17,773 by trust here, #843 by citations
- Genetics — 88 citations into it
- Plant Science — 55 citations into it; #1,052 of 8,232 by trust here, #2,405 by citations
- Ecology — 54 citations into it
- Artificial Intelligence — 24 citations into it
- Biomedical Engineering — 11 citations into it
- Natural Language Processing — 5 citations into it
Whom Jared T. Simpson trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Heng Li
- Eugene W. Myers
- Nicholas J. Loman
- Pavel A. Pevzner
- Daniel R. Zerbino
- Paolo Ferragina
- Mark J. P. Chaisson
- Jared T Simpson
- Richard Durbin
- Giovanni Manzini
Who trusts Jared T. Simpson overall
- Niranjan Nagarajan
- Rayan Chikhi
- Aleksey V. Zimin
- Bonnie Berger
- Yongchao Liu
- Todd J. Treangen
- M. Mahmoud
- Yunhao Wang
- Sergey Koren
- Fritz J. Sedlazeck
Papers from Jared T. Simpson's perspective
Ordered by how strongly the researchers Jared T. Simpson trusts endorse each paper. Same corpus, a different order for every researcher.
- Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
- De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. (Genome Research)
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing (Nature Biotechnology)
- Basic local alignment search tool.
- Whole-genome re-sequencing. (Current Opinion in Genetics and Development)
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- Hybrid error correction and de novo assembly of single-molecule sequencing reads (Nature Biotechnology)
- Multiple sequence alignment using partial order graphs
- Limitations of next-generation genome sequence assembly (Nature Methods)
- Resolving the complexity of the human genome using single-molecule sequencing (Nature)
Their papers
- Nanopore sequencing and assembly of a human genome with ultra-long reads (2017) — 1,714 citations
- A global reference for human genetic variation (2015) — 16,925 citations
- A complete bacterial genome assembled de novo using only nanopore sequencing data (2015) — 1,217 citations
- Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly (2016) — 1,005 citations
- Efficient de novo assembly of large genomes using compressed data structures. (2012) — 805 citations
- Assemblathon 1: a competitive assessment of de novo short read assembly methods. (2011) — 544 citations
- Shotgun metagenomics, from sampling to analysis (2017) — 1,703 citations
- Detecting DNA cytosine methylation using nanopore sequencing (2017) — 976 citations
- MinION Analysis and Reference Consortium: Phase 1 data release and analysis (2015) — 302 citations
- Nanopore native RNA sequencing of a human poly(A) transcriptome (2018) — 631 citations
- Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples (2017) — 1,104 citations
- Establishment and cryptic transmission of Zika virus in Brazil and the Americas (2017) — 543 citations
- Real-time, portable genome sequencing for Ebola surveillance (2016) — 1,345 citations
- The khmer software package: enabling efficient nucleotide sequence analysis (2015) — 363 citations