Claude W. dePamphilis
Molecular Biology · 2006–2019
A researcher in the Science corpus: 13 papers; trusts 2 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 233 citations into it
Whom Claude W. dePamphilis trusts
Their strongest outbound trust, strongest first, inferred from their citations.
- Robert C. Edgar (in Molecular Biology)
- Ralph Bock (in Molecular Biology)
Papers from Claude W. dePamphilis's perspective
Ordered by how strongly the researchers Claude W. dePamphilis trusts endorse each paper. Same corpus, a different order for every researcher.
- De novo assembly of human genomes with massively parallel short read sequencing. (Genome Research)
- Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns (Proceedings of the National Academy of Sciences of the United States of America)
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing (J. Comput. Biol.)
- BLAST+: architecture and applications
- Fast gapped-read alignment with Bowtie 2
- Structure, function, and inheritance of plastid genomes
- The Sexual Inheritance of Plant Organelles
- Expansion and Contraction of the Chloroplast Inverted Repeat in Apiaceae Subfamily Apioideae
- MUSCLE: a multiple sequence alignment method with reduced time and space complexity
- Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes (Nature reviews genetics)
Their papers
- The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) (2006) — 4,386 citations
- Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns (2007) — 1,071 citations
- Ancestral polyploidy in seed plants and angiosperms (2011) — 2,061 citations
- The evolution of the plastid chromosome in land plants: gene content, gene order, gene function (2011) — 1,303 citations
- GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes (2018) — 3,193 citations
- Phylotranscriptomic analysis of the origin and early diversification of land plants (2014) — 1,136 citations
- One thousand plant transcriptomes and the phylogenomics of green plants (2019) — 1,332 citations
- Data access for the 1,000 Plants (1KP) project (2014) — 505 citations
- The Parasitic Plant Genome Project: New Tools for Understanding the Biology of Orobanche and Striga (2012) — 134 citations
- The compact Selaginella genome identifies changes in gene content associated with the evolution of vascular plants (2011) — 799 citations
- Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1 (2010) — 217 citations
- The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) (2008) — 1,081 citations
- Widespread genome duplications throughout the history of flowering plants. (2006) — 714 citations