Ancestral polyploidy in seed plants and angiosperms

By Yuannian Jiao, N. Wickett, Saravanaraj N. Ayyampalayam, Andre S. Chanderbali, Lena Landherr, Paula E. Ralph, L. Tomsho, Yi Hu, Haiying Liang, Pamela S. Soltis and 7 more. Nature, 2011

2,061 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/8b18009f81e4265725f61d7b0ae4437d5831edd4

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Citations in the corpus

Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences (2011, background): “…events, like those that occurred in the stems of vertebrate, teleost, salmonid, and ﬂ owering plant lineages (Allendorf and Danzmann 1997; Amores et al. 1998; Dehal and Boore 2005; Koop et al. 2008; Jiao et al. 2011), result in paralogs that are initially identical but diverge over time.”
Is post-polyploidization diploidization the key to the evolutionary success of angiosperms? (2016, background): “…speciation events involve a change in ploidy (neopolyploidy; Wood et al., 2009) and that all flowering plants have experienced at least one WGD episode in their evolutionary history (palaeopolyploidy; Bowers et al., 2003; Blanc & Wolfe, 2004; Van de Peer, Maere & Meyer, 2009; Jiao et al., 2011).”
Draft genome of the living fossil Ginkgo biloba (2016, result): “The latter of these time periods is consistent with that previously reported for seed plants [46–48], while the former time period is far later than when Gingko and conifers diverged, indicating a potential independent WGD event postdating the origin of Ginkgo by at least 170 mya [49].”
Pure polyploidy: Closing the gaps in autopolyploid research (2017, background): “This is true in terms of both ancient polyploidy—all seed plants and all angiosperms are descendants of common polyploid ancestors (Jiao et al., 2011)—and recent polyploidy, which occurs most frequently in ferns, lycophytes, and flowering plants (Wood et al., 2009).”
Homoeologs: What Are They and How Do We Infer Them? (2016, background): “Many exciting findings have been published recently that provide insights into the structural and functional divergence of homoeologs and the chromosomes they reside on [3,9,81,82].”
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis (2013, background): “The purpose of the mixture model is to identify the mixed normal distributions that best describe the observed Ks distribution (58).”
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity (2012, background): “A recent study, through analyzing the phylogenetic trees of cross-species gene families, reported two ancestral WGD events for seed plants and angiosperms respectively (59).”
Impacts of Nitrogen and Phosphorus: From Genomes to Natural Ecosystems and Agriculture (2017, background): “Polyploidy in particular has been implicated in the remarkably successful radiations of angiosperms (Soltis et al., 2009; Jiao et al., 2011; Albert et al., 2013; Tank et al., 2015; Van de Peer et al., 2017) and teleost fish (Van de Peer et al., 2009; Braasch and Postlethwait, 2012).”
The genome of melon (Cucumis melo L.) (2012, background): “An additional paleo-hexaploidization event (γ) followed by lineage-specific WGDs has shaped the structure of eudicot genomes (40).”