The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

By Gerald A. Tuskan, S. DiFazio, S. Jansson, J. Bohlmann, Igor V. Grigoriev, U. Hellsten, N. Putnam, S. Ralph, Stephane Rombauts, A. Salamov and 100 more. Science, 2006

4,386 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/342b4dc18595a8975e8b7188a0e40c221ce925e1

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Citations in the corpus

Genome Structure of the Legume, Lotus japonicus (2008, background): “trichocarpa (64 TIR NBS–LRR versus 233 non-TIR NBS–LRR).(37) Fifty-five of the 120 (83 TIR NBS–LRR and 37 non-TIR NBS–LRR) presumptive R genes assigned in the contiguous sequences of single or connected TAC/BAC clones were found as singletons, while the remaining 65 formed gene clusters, each consis”
The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors (2009, background): “Critical in this endeavor will be the use of genomic information on the recently sequenced Populus trichocarpa (Tuskan et al. 2006) and its mycorrhizal symbionts.”
Heavy metals and woody plants - biotechnologies for phytoremediation (2011, background): “Moreover, the poplar genome has been entirely sequenced (Tuskan et al. 2006).”
The genome of the pear (Pyrus bretschneideri Rehd.) (2013, background): “…3 domestica) (Velasco et al. 2010), strawberry (Fragaria vesca) (Shulaev et al. 2010), Arabidopsis (Arabidopsis thaliana) (The Arabidopsis Genome Initiative 2000), grape (Vitis vinifera) ( Jaillon et al. 2007), and black cottonwood (Populus trichocarpa) (Tuskan et al. 2006) (Supplemental Fig.”
Rising concentrations of atmospheric CO2 have increased growth in natural stands of quaking aspen (Populus tremuloides) (2009, background): “In addition, P. trichocarpa is the first tree species to have its genome sequenced (Tuskan et al., 2006), providing an abundance of genomic information with which to assess individual variation.”
Changing perspectives on regeneration ecology and genetic diversity in western quaking aspen: implications for silviculture (2012, methodology): “The tendency to sucker can vary dramatically by clone (Farmer 1962; Zufa 1971; Schier 1974) and neither defoliation nor stem girdling illicits as strong a suckering response as decapitation (Wan et al. 2006).”
Poplar and its Bacterial Endophytes: Coexistence and Harmony (2009, background): “When the genome of P. trichocarpa was sequenced [see http://genome.jgi-psf.org/Poptr1 1/Poptr1 1.home.html; (Tuskan et al., 2006)], a variety of putative endophyte sequences were also identified (S. DiFazio, pers. comm.).”
Evolution and diversity of plant cell walls: from algae to flowering plants. (2011, background): “Forexample,ligninisaphenolic sequencing projects have focused land plants, including Arabidopsis (129), rice (51), poplar (134), Brachypodium (130), Joint Genome Initiative, Department of Energy, United States), and Physcomitrella patens (111), whereas only a few have focused on algae. red algae…”