Jongsik Chun
Molecular Biology · 2007–2021
A researcher in the Science corpus: 13 papers; trusts 18 researchers and is trusted by 2 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 99 citations into it; #14,356 of 17,773 by trust here, #4,586 by citations
- Ecology — 48 citations into it
- Genetics — 36 citations into it
- Clinical Biochemistry — 12 citations into it
- Computational Biology & Bioinformatics — 10 citations into it
- Paleontology — 9 citations into it
Whom Jongsik Chun trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Michael P. Cummings
- E. Stackebrandt
- Michael Richter
- Joseph Felsenstein
- Ramon Rosselló-Mora
- Seok-Hwan Yoon
- B. Ewing
- Konstantinos T. Konstantinidis
- Fredrik Ronquist
- Sudhir Kumar
Who trusts Jongsik Chun overall
- Mincheol Kim
- Jipeng Chen
- A. Ambrosini
- Seok-Hwan Yoon
- Inga Miliūtė
- M. Collavino
- Seong-In Na
- A. Beneduzi
- Rocheli de Souza
- Daniel McDonald
Papers from Jongsik Chun's perspective
Ordered by how strongly the researchers Jongsik Chun trusts endorse each paper. Same corpus, a different order for every researcher.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- MUSCLE: multiple sequence alignment with high accuracy and high throughput.
- Versatile and open software for comparing large genomes (Genome Biology)
- Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. (International Journal of Systematic and Evolutionary Microbiology)
- RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments (PLoS ONE)
- Evolutionary trees from DNA sequences: A maximum likelihood approach (Journal of Molecular Evolution)
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Their papers
- EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. (2007) — 2,119 citations
- Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. (2018) — 2,746 citations
- Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. (2014) — 3,009 citations
- Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. (2012) — 5,290 citations
- Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies (2017) — 7,001 citations
- OrthoANI: An improved algorithm and software for calculating average nucleotide identity. (2016) — 2,836 citations
- A large-scale evaluation of algorithms to calculate average nucleotide identity (2017) — 3,244 citations
- ContEst16S: an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences. (2017) — 525 citations
- Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity (2021) — 482 citations
- UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction (2018) — 1,237 citations
- Strong elevational trends in soil bacterial community composition on Mt. Halla, South Korea (2014) — 143 citations
- Correlation between microbial community structure and biofouling in a laboratory scale membrane bioreactor with synthetic wastewater (2012) — 111 citations
- Evidence for multiple waves of global transmission within the seventh cholera pandemic (2011) — 709 citations