Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.

By E. Stackebrandt, W. Frederiksen, George M. Garrity, P. Grimont, Peter Kämpfer, Martin C. J. Maiden, X. Nesme, Ramon Rosselló-Mora, J. Swings, H. G. Trüper and 3 more. International Journal of Systematic and Evolutionary Microbiology, 2002

1,660 citations recorded by the source corpus.

Subfields: Clinical Biochemistry, Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/694d050c915ef9d30c146b2fd45ae09ea26b42c1

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Citations in the corpus

Biodiversity and systematics of nematode-bacterium entomopathogens (2006, methodology): “These methods have been discussed as potential methods to replace DNA–DNA reassociation techniques in the future, once a correlation with DNA hybridization values has been established (Stackebrandt et al., 2002).”
From soil to gut: Bacillus cereus and its food poisoning toxins. (2008, background): “…clinical symptoms may continue to bear names that may not necessarily agree with their genomic relatedness so as to avoid unnecessary confusion among microbiologists and nonmicrobiologists’ (Stackebrandt et al., 2002), according to rule 56a(5) in the Bacteriological Code (Lapage et al., 1992).”
Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes (2006, background): “To isolate type strains and a representative collection of related strains, and to deposit them in culture collections as required for the valid description of new species (101), will require great dedication and a high level of commitment and expertise from soil”
Size doesn’t matter: towards a more inclusive philosophy of biology (2007, background): “An influential proposal designed to overcome these problems is the quasiofficial (American Society of Microbiology) species definition (Vandamme et al. 1996; Stackebrandt et al. 2002).”
The Genus Aeromonas: Taxonomy, Pathogenicity, and Infection (2010, methodology): “As outlined in a reevaluation of species definition by a prestigious ad hoc committee, certain standard methods should be included in the description of a new species, including almost complete 16S rRNA gene sequences, phenotypic properties including discriminatory markers, and mol% G C content (274”
Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy (2007, background): “In 2002, an ad hoc committee for the reevaluation of species definition in bacteriology (24) advised that all new bacterial species descriptions include an rRNA sequence from the type strain, and in 2001, Bergey’s Trust published a revised higher-order taxonomy attempting to reconcile bacterial taxo”
Taxonomy of Pseudomonas syringae. (2010, background): “Because comparative analyses of genes in general often do not produce concordant relationships, a further criterion should be that genes selected should indicate relationships that correspond to that of the overall genome and it is obvious that consideration of several genes is preferable to relianc”
Microbiology and the species problem (2010, methodology): “These include: 16S rRNA genes; DNA:DNA hybridization; average nucleotide identity (Konstantinidis and Tiedje 2005); and core or house-keeping genes (Rossello ´-Mora and Amann 2001; Stackebrandt 2006; Nesbo et al. 2006).”
Impact of 16S rRNA Gene Sequence Analysis for Identification of Bacteria on Clinical Microbiology and Infectious Diseases (2004, background): “This is a critical taxonomic concern, and a thorough discussion is beyond the scope of this review (26, 33, 55, 56, 94, 106, 108).”