Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.

By O. Kim, Yong-Joon Cho, Kihyun Lee, Seok-Hwan Yoon, Mincheol Kim, Hyunsoo Na, Sang-Cheol Park, Yoon-Seong Jeon, Jae-Hak Lee, H. Yi and 2 more. International Journal of Systematic and Evolutionary Microbiology, 2012

5,290 citations recorded by the source corpus.

Subfields: Clinical Biochemistry, Ecology, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/57dfc18815bba1c3737dbc2e5497fd1fc595edb5

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In Clinical Biochemistry

Jongsik Chun

In Ecology

In Molecular Biology

Citations in the corpus

Strong elevational trends in soil bacterial community composition on Mt. Halla, South Korea (2014, methodology): “Next, the sequences were aligned against the EzTaxon-extended database (http://eztaxon-e.ezbiocloud.net/; Kim et al., 2012) and then trimmed, so that subsequent analyses were constrained to the same portion of the 16S rRNA gene (V1eV3 region).”
A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights (2014, methodology): “mined according to the methods described previously (19).”
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. (2014, neutral): “The degree of completeness of an rRNA gene sequence was checked as described previously (Kim et al., 2012).”
Actinobacteria from Extreme Niches in Morocco and Their Plant Growth-Promoting Potentials (2019, methodology): “The 16S rDNA sequences were compared with the publicly available nucleotide sequences in the EzBioCloud database [22].”
Use of Rhizobium leguminosarum as a potential biofertilizer for Lactuca sativa and Daucus carota crops (2013, result): “The sequences obtained were compared with those from EzTaxon-e server (Kim et al., 2012).”
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies (2017, methodology): “The up-to-date reference 16S rRNA gene sequences were maintained as described earlier [3].”