Thomas Rattei
Molecular Biology · 2006–2018
A researcher in the Science corpus: 14 papers; trusts 12 researchers and is trusted by 2 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 246 citations into it; #14,128 of 17,773 by trust here, #2,434 by citations
- Genetics — 54 citations into it
- Computational Biology & Bioinformatics — 28 citations into it
- Artificial Intelligence — 9 citations into it
Whom Thomas Rattei trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Thomas Rattei overall
Papers from Thomas Rattei's perspective
Ordered by how strongly the researchers Thomas Rattei trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- Identification of common molecular subsequences.
- A genomic perspective on protein families.
- The Pfam protein families database
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- RefSeq: an update on prokaryotic genome annotation and curation
- NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins (Nucleic Acids Res.)
- eggNOG: automated construction and annotation of orthologous groups of genes
- Expanded microbial genome coverage and improved protein family annotation in the COG database
Their papers
- eggNOG v4.0: nested orthology inference across 3686 organisms (2013) — 618 citations
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences (2015) — 1,948 citations
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses (2018) — 4,095 citations
- SIMAP—the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage (2013) — 29 citations
- eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges (2011) — 537 citations
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2017) — 2,110 citations
- Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software (2017) — 675 citations
- MIPS: analysis and annotation of proteins from whole genomes in 2005 (2006) — 330 citations
- Deciphering the evolution and metabolism of an anammox bacterium from a community genome (2006) — 1,264 citations
- Gepard: a rapid and sensitive tool for creating dotplots on genome scale (2007) — 720 citations
- Minimum Information about an Uncultivated Virus Genome (MIUViG) (2018) — 644 citations
- Complete nitrification by Nitrospira bacteria (2015) — 2,323 citations
- The dynamic genome of Hydra (2010) — 805 citations
- A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria (2010) — 765 citations