T. T. Lam

Molecular Biology · 2009–2022

A researcher in the Science corpus: 13 papers; trusts 13 researchers and is trusted by 3 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 109 citations into it; #7,709 of 17,773 by trust here, #1,504 by citations
• Genetics — 46 citations into it; #4,153 of 6,854 by trust here, #705 by citations
• Paleontology — 22 citations into it; #694 of 1,427 by trust here, #513 by citations
• Artificial Intelligence — 13 citations into it
• Ecological Modeling — 5 citations into it

Whom T. T. Lam trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Alexandros Stamatakis
2. Ziheng Yang
3. Guangchuang Yu
4. Sergei L. Kosakovsky Pond
5. Ivica Letunic
6. Andrew Rambaut
7. Hirohisa Kishino

Who trusts T. T. Lam overall

1. Guangchuang Yu
2. Shuangbin Xu
3. Shuangbing Xu
4. M. Hoffmann
5. Li-Gen Wang
6. Maciej F. Boni
7. Zehan Dai

Papers from T. T. Lam's perspective

Ordered by how strongly the researchers T. T. Lam trusts endorse each paper. Same corpus, a different order for every researcher.

1. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
2. HyPhy: hypothesis testing using phylogenies (Bioinform.)
3. Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood (Systematic Biology)
4. Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees (Nucleic Acids Res.)
5. EvolView, an online tool for visualizing, annotating and managing phylogenetic trees (Nucleic Acids Res.)
6. TreeDyn: towards dynamic graphics and annotations for analyses of trees (BMC Bioinformatics)
7. BEAST 2: A Software Platform for Bayesian Evolutionary Analysis (PLoS Comput. Biol.)
8. Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. (Systematic Biology)
9. Bioconductor: open software development for computational biology and bioinformatics (Genome Biology)
10. phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data (PLoS ONE)

Their papers

• SOAP2: an improved ultrafast tool for short read alignment (2009) — 3,707 citations
• The sequence and de novo assembly of the giant panda genome (2009) — 1,210 citations
• SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler (2012) — 4,725 citations
• SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads (2013) — 863 citations
• Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen) (2016) — 1,995 citations
• MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph (2014) — 8,291 citations
• ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data (2017) — 4,268 citations
• Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree. (2018) — 625 citations
• treeio: an R package for phylogenetic tree input and output with richly annotated and associated data. (2019) — 543 citations
• MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices. (2016) — 1,798 citations
• Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation data (2022) — 310 citations
• Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic (2020) — 865 citations
• Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins (2020) — 1,644 citations