Sergei L. Kosakovsky Pond
Molecular Biology · 2005–2020
A researcher in the Science corpus: 15 papers; trusts 17 researchers and is trusted by 21 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 56 citations into it; #1,936 of 17,773 by trust here, #4,409 by citations
- Genetics — 39 citations into it; #1,192 of 6,854 by trust here, #1,346 by citations
- Virology — 19 citations into it; #34 of 84 by trust here, #19 by citations
- Artificial Intelligence — 13 citations into it
- Paleontology — 7 citations into it
- Plant Science — 5 citations into it; #2,150 of 8,232 by trust here, #3,378 by citations
Whom Sergei L. Kosakovsky Pond trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Ziheng Yang
- Joseph Felsenstein
- Simon D. W. Frost
- Rasmus Nielsen
- David Posada
- Wen-Hsiung Li
- John P. Huelsenbeck
- Masami Hasegawa
- N. Sugiura
- Spencer V. Muse
Who trusts Sergei L. Kosakovsky Pond overall
- Art F. Y. Poon
- Simon D. W. Frost
- Ben Murrell
- Fraser Iain Lewis
- Scott Weaver
- B. Thyagarajan
- Adi Stern
- Joel O. Wertheim
- Darren P. Martin
- Sudhir Kumar
Papers from Sergei L. Kosakovsky Pond's perspective
Ordered by how strongly the researchers Sergei L. Kosakovsky Pond trusts endorse each paper. Same corpus, a different order for every researcher.
- Evolutionary trees from DNA sequences: A maximum likelihood approach (Journal of Molecular Evolution)
- Dating of the human-ape splitting by a molecular clock of mitochondrial DNA (Journal of Molecular Evolution)
- Codon-substitution models for heterogeneous selection pressure at amino acid sites. (Genetics)
- A coalescent-based method for detecting and estimating recombination from gene sequences. (Genetics)
- Consequences of recombination on traditional phylogenetic analysis. (Genetics)
- Bayes empirical bayes inference of amino acid sites under positive selection. (Molecular biology and evolution)
- Monte Carlo Sampling Methods Using Markov Chains and Their Applications
- Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. (Molecular biology and evolution)
- Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. (Molecular biology and evolution)
- Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. (Molecular biology and evolution)
Their papers
- HyPhy: hypothesis testing using phylogenies (2005) — 2,535 citations
- Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models (2008) — 90 citations
- An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope (2007) — 117 citations
- Not so different after all: a comparison of methods for detecting amino acid sites under selection. (2005) — 2,181 citations
- Detecting Individual Sites Subject to Episodic Diversifying Selection (2012) — 1,657 citations
- IDEPI: Rapid Prediction of HIV-1 Antibody Epitopes and Other Phenotypic Features from Sequence Data Using a Flexible Machine Learning Platform (2014) — 893 citations
- Automated phylogenetic detection of recombination using a genetic algorithm. (2006) — 930 citations
- Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes. (2018) — 866 citations
- Datamonkey: rapid detection of selective pressure on individual sites of codon alignments (2005) — 1,375 citations
- Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa (2020) — 1,117 citations
- HyPhy 2.5 - a customizable platform for evolutionary hypothesis testing using phylogenies. (2019) — 605 citations
- Persistent HIV-1 replication maintains the tissue reservoir during therapy (2016) — 620 citations
- Gene-wide identification of episodic selection. (2015) — 568 citations
- RELAX: detecting relaxed selection in a phylogenetic framework. (2014) — 672 citations
- A random effects branch-site model for detecting episodic diversifying selection. (2011) — 432 citations