Guangchuang Yu
Molecular Biology · 2012–2022
A researcher in the Science corpus: 17 papers; trusts 42 researchers and is trusted by 25 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 113 citations into it; #1,302 of 17,773 by trust here, #3,514 by citations
- Genetics — 31 citations into it; #2,307 of 6,854 by trust here, #2,894 by citations
- Artificial Intelligence — 17 citations into it
- Plant Science — 15 citations into it
- Paleontology — 14 citations into it; #1,394 of 1,427 by trust here, #513 by citations
- Ecological Modeling — 8 citations into it; #682 of 2,530 by trust here, #2,047 by citations
- Statistics and Probability — 8 citations into it
- Computer Vision and Pattern Recognition — 7 citations into it
Whom Guangchuang Yu trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Alexandros Stamatakis
- Liam J. Revell
- Emmanuel Paradis
- R. A. Villanueva
- François Chevenet
- Li-Gen Wang
- Dekang Lin
- T. T. Lam
- John D. Storey
- Lam-Tung Nguyen
Who trusts Guangchuang Yu overall
- Shuangbin Xu
- Shuangbing Xu
- Tianzhi Wu
- Erqiang Hu
- Qianwen Wang
- Zehan Dai
- Li-Gen Wang
- Lin Li
- Li Zhan
- Meijun Chen
Papers from Guangchuang Yu's perspective
Ordered by how strongly the researchers Guangchuang Yu trusts endorse each paper. Same corpus, a different order for every researcher.
- Bioconductor: open software development for computational biology and bioinformatics (Genome Biology)
- New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
- ggplot2 - Elegant Graphics for Data Analysis (2nd Edition)
- Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood (Systematic Biology)
- HyPhy: hypothesis testing using phylogenies (Bioinform.)
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- EvolView, an online tool for visualizing, annotating and managing phylogenetic trees (Nucleic Acids Res.)
- PAML 4: phylogenetic analysis by maximum likelihood. (Molecular biology and evolution)
- BEAST 2: A Software Platform for Bayesian Evolutionary Analysis (PLoS Comput. Biol.)
- Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees (Nucleic Acids Res.)
Their papers
- clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters (2012) — 30,116 citations
- ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data (2017) — 4,268 citations
- Using ggtree to Visualize Data on Tree‐Like Structures (2020) — 1,254 citations
- Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree. (2018) — 625 citations
- DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis (2015) — 1,071 citations
- ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. (2016) — 1,600 citations
- ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization (2015) — 3,631 citations
- treeio: an R package for phylogenetic tree input and output with richly annotated and associated data. (2019) — 543 citations
- ggVennDiagram: An Intuitive, Easy-to-Use, and Highly Customizable R Package to Generate Venn Diagram (2021) — 391 citations
- clusterProfiler 4.0: A universal enrichment tool for interpreting omics data (2021) — 12,212 citations
- Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation data (2022) — 310 citations
- Exploring Epigenomic Datasets by ChIPseeker (2022) — 321 citations
- ggtreeExtra: Compact Visualization of Richly Annotated Phylogenetic Data (2021) — 299 citations
- Use ggbreak to Effectively Utilize Plotting Space to Deal With Large Datasets and Outliers (2021) — 312 citations
- Gene Ontology Semantic Similarity Analysis Using GOSemSim. (2020) — 300 citations
- IOBR: Multi-Omics Immuno-Oncology Biological Research to Decode Tumor Microenvironment and Signatures (2020) — 1,065 citations
- RIdeogram: drawing SVG graphics to visualize and map genome-wide data on the idiograms (2019) — 455 citations