Nuno A. Fonseca
Molecular Biology · 2011–2020
A researcher in the Science corpus: 10 papers; trusts 4 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 257 citations into it
- Artificial Intelligence — 18 citations into it
Whom Nuno A. Fonseca trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Nuno A. Fonseca overall
Papers from Nuno A. Fonseca's perspective
Ordered by how strongly the researchers Nuno A. Fonseca trusts endorse each paper. Same corpus, a different order for every researcher.
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Genome Biology)
- Basic local alignment search tool.
- Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
- Mapping short DNA sequencing reads and calling variants using mapping quality scores. (Genome Research)
- RNA-Seq: a revolutionary tool for transcriptomics (Nature reviews genetics)
- SOAP: short oligonucleotide alignment program (Bioinform.)
- SSAHA: a fast search method for large DNA databases. (Genome Research)
- Whole-genome re-sequencing. (Current Opinion in Genetics and Development)
- RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. (Genome Research)
- BFAST: An Alignment Tool for Large Scale Genome Resequencing (PLoS ONE)
Their papers
- Tools for mapping high-throughput sequencing data (2012) — 297 citations
- Expression Atlas update—a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments (2013) — 330 citations
- Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species (2013) — 725 citations
- Assemblathon 1: a competitive assessment of de novo short read assembly methods. (2011) — 544 citations
- Genomic basis for RNA alterations in cancer (2020) — 354 citations
- Expression Atlas: gene and protein expression across multiple studies and organisms (2017) — 361 citations
- Two independent modes of chromatin organization revealed by cohesin removal (2017) — 1,066 citations
- ArrayExpress update – from bulk to single-cell expression data (2018) — 508 citations
- Expression Atlas update: from tissues to single cells (2019) — 478 citations
- Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (2020) — 508 citations