Eric Westhof

Molecular Biology · 2001–2023

A researcher in the Science corpus: 15 papers; trusts 15 researchers and is trusted by 26 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 218 citations into it; #1,640 of 17,773 by trust here, #2,080 by citations
• Materials Chemistry — 76 citations into it
• Genetics — 11 citations into it; #1,703 of 6,854 by trust here, #3,531 by citations

Whom Eric Westhof trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Neocles Leontis
2. Nicolas Guex
3. Helen M. Berman
4. Mariusz Popenda
5. Rhiju Das
6. Michael Levitt
7. Marc-André Parisien
8. Stephen Neidle
9. Manuel C. Peitsch
10. Wilma K. Olson

Who trusts Eric Westhof overall

1. Neocles Leontis
2. Michael Sarver
3. Xiang-Jun Lu
4. Parin Sripakdeevong
5. Rhiju Das
6. Michal J. Boniecki
7. Padideh Danaee
8. Huanwang Yang
9. Maciej Antczak
10. José Almeida Cruz

Papers from Eric Westhof's perspective

Ordered by how strongly the researchers Eric Westhof trusts endorse each paper. Same corpus, a different order for every researcher.

1. Protein data bank
2. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
3. Quantitative analysis of nucleic acid three-dimensional structures.
4. Geometric nomenclature and classification of RNA base pairs.
5. ModeRNA: a tool for comparative modeling of RNA 3D structure
6. New metrics for comparing and assessing discrepancies between RNA 3D structures and models.
7. Basic local alignment search tool.
8. RNAstructure: software for RNA secondary structure prediction and analysis (BMC Bioinformatics)
9. The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids.
10. Rfam: updates to the RNA families database (Nucleic Acids Res.)

Their papers

• Geometric nomenclature and classification of RNA base pairs. (2001) — 1,059 citations
• New metrics for comparing and assessing discrepancies between RNA 3D structures and models. (2009) — 200 citations
• RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools (2019) — 76 citations
• Assessment of three-dimensional RNA structure prediction in CASP15 (2023) — 146 citations
• Single processing center models for human Dicer and bacterial RNase III. (2004) — 1,060 citations
• RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures (2015) — 197 citations
• RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers (2020) — 141 citations
• Tools for the automatic identification and classification of RNA base pairs (2003) — 327 citations
• RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme (2017) — 197 citations
• The non-Watson-Crick base pairs and their associated isostericity matrices. (2002) — 773 citations
• A standard reference frame for the description of nucleic acid base-pair geometry. (2001) — 576 citations
• Genome evolution in yeasts (2004) — 1,651 citations
• Halogen bonds in biological molecules. (2004) — 1,482 citations
• 32 High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome (2013) — 121 citations
• An RNA-centric historical narrative around the Protein Data Bank (2021) — 23 citations