Andrea Califano

Molecular Biology · 2001–2019

A researcher in the Science corpus: 18 papers; trusts 1 researcher and is trusted by 1 researcher here, as inferred from the citation graph.

Subfields

• Molecular Biology — 244 citations into it; #17,446 of 17,773 by trust here, #1,360 by citations
• Probabilistic & Bayesian Methods — 6 citations into it

Whom Andrea Califano trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Nir Friedman

Who trusts Andrea Califano overall

1. J. Sáez-Rodríguez

Papers from Andrea Califano's perspective

Ordered by how strongly the researchers Andrea Califano trusts endorse each paper. Same corpus, a different order for every researcher.

1. Information Theory: 1948-1998 - Guest Editorial
2. Functional discovery via a compendium of expression profiles. (Cell)
3. A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules (Science)
4. A Tutorial on Learning with Bayesian Networks
5. Approximating discrete probability distributions with dependence trees
6. Using Bayesian Networks to Analyze Expression Data (Annual International Conference on Research in Computational Molecular Biology)
7. Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells. (Genome Research)
8. The large-scale organization of metabolic networks (Nature)
9. Genomic targets of the human c-Myc protein. (Genes & Development)
10. A gene atlas of the mouse and human protein-encoding transcriptomes. (Proceedings of the National Academy of Sciences of the United States of America)

Their papers

• Structure-based prediction of protein-protein interactions on a genome-wide scale (2012) — 685 citations
• Prediction of central nervous system embryonal tumour outcome based on gene expression (2002) — 2,465 citations
• Reverse engineering cellular networks (2006) — 388 citations
• An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma (2011) — 710 citations
• Reverse engineering of regulatory networks in human B cells (2005) — 1,474 citations
• Network-based inference of protein activity helps functionalize the genetic landscape of cancer (2016) — 684 citations
• A promoter-level mammalian expression atlas (2014) — 1,941 citations
• NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth (2006) — 890 citations
• Mutations of multiple genes cause deregulation of NF-kB in diffuse large B-cell lymphoma (2009) — 1,105 citations
• Toward understanding and exploiting tumor heterogeneity (2015) — 708 citations
• A community computational challenge to predict the activity of pairs of compounds (2014) — 306 citations
• Cross-species single-cell analysis of pancreatic ductal adenocarcinoma reveals antigen-presenting cancer-associated fibroblasts. (2019) — 1,681 citations
• The transcriptional network for mesenchymal transformation of brain tumors (2009) — 594 citations
• The Immune Landscape of Cancer (2018) — 4,752 citations
• ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information (2016) — 351 citations
• The DLEU2/miR-15a/16-1 cluster controls B cell proliferation and its deletion leads to chronic lymphocytic leukemia. (2010) — 852 citations
• ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context (2004) — 2,804 citations
• Gene Expression Profiling of B Cell Chronic Lymphocytic Leukemia Reveals a Homogeneous Phenotype Related to Memory B Cells (2001) — 1,018 citations