Stijn van Dongen
Molecular Biology · 2000–2021
A researcher in the Science corpus: 12 papers; trusts 26 researchers and is trusted by 41 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 134 citations into it; #912 of 17,773 by trust here, #1,144 by citations
- Cancer Research — 67 citations into it; #357 of 1,780 by trust here, #150 by citations
- Computational Biology & Bioinformatics — 10 citations into it
- Plant Science — 10 citations into it
- Artificial Intelligence — 7 citations into it
Whom Stijn van Dongen trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Iroon Polytechniou
- Sylvain Brohée
- Beate Dorow
- Li Li
- Amos Bairoch
- Jacques van Helden
- Danzhi Huang
- Anton J. Enright
- Dominic Widdows
- Christian J. Stoeckert Jr.
Who trusts Stijn van Dongen overall
- Pavel Berkhin
- Patricia Siguier
- Beate Dorow
- Ya Yang
- Tamás Nepusz
- Matthew W. Hahn
- Conrad Lee
- Cei Abreu-Goodger
- Karoline Faust
- J. H. Morris
Papers from Stijn van Dongen's perspective
Ordered by how strongly the researchers Stijn van Dongen trusts endorse each paper. Same corpus, a different order for every researcher.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- The Pfam protein families database
- An efficient algorithm for large-scale detection of protein families. (Nucleic Acids Research)
- Gene Ontology: tool for the unification of biology
- The SWISS-PROT protein sequence data bank and its supplement TrEMBL
- The microRNAs of Caenorhabditis elegans. (Genes & Development)
- The InterPro database, an integrated documentation resource for protein families, domains and functional sites (Nucleic Acids Res.)
- The COG database: new developments in phylogenetic classification of proteins from complete genomes (Nucleic Acids Res.)
- Identification of common molecular subsequences.
- OrthoMCL: identification of ortholog groups for eukaryotic genomes. (Genome Research)
Their papers
- miRBase: tools for microRNA genomics (2007) — 4,605 citations
- miRBase: microRNA sequences, targets and gene nomenclature (2005) — 4,888 citations
- Zebrafish MiR-430 Promotes Deadenylation and Clearance of Maternal mRNAs (2006) — 1,713 citations
- Requirement of bic/microRNA-155 for Normal Immune Function (2007) — 2,022 citations
- Graph Clustering Via a Discrete Uncoupling Process (2008) — 749 citations
- Kraken: A set of tools for quality control and analysis of high-throughput sequence data (2013) — 406 citations
- Network visualization and analysis of gene expression data using BioLayout Express3D (2009) — 450 citations
- Single-cell multi-omics analysis of the immune response in COVID-19 (2021) — 626 citations
- Using MCL to extract clusters from networks. (2012) — 402 citations
- Detecting microRNA binding and siRNA off-target effects from expression data (2008) — 296 citations
- An efficient algorithm for large-scale detection of protein families. (2002) — 3,667 citations
- A cluster algorithm for graphs (2000) — 465 citations