Joshua Quick
Molecular Biology · 2014–2021
A researcher in the Science corpus: 16 papers; trusts 6 researchers and is trusted by 23 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 168 citations into it; #2,670 of 17,773 by trust here, #3,066 by citations
- Artificial Intelligence — 17 citations into it
- Biomedical Engineering — 14 citations into it
Whom Joshua Quick trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Heng Li
- Nicholas J. Loman
- Sergey Koren
- Christopher J. Lee
- Alexey A. Gurevich
- Aaron R. Quinlan
- Timothy L. Bailey
- Jared T. Simpson
- Chen-Shan Chin
Who trusts Joshua Quick overall
- A. Nemudryi
- Franka J. Rang
- Fritz J. Sedlazeck
- A. Nemudraia
- Hengyun Lu
- Jennifer L. Gardy
- Ryan R. Wick
- Jared T. Simpson
- Aleksey V. Zimin
- James M. Heather
Papers from Joshua Quick's perspective
Ordered by how strongly the researchers Joshua Quick trusts endorse each paper. Same corpus, a different order for every researcher.
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing (Nature Biotechnology)
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- Multiple sequence alignment using partial order graphs
- Hybrid error correction and de novo assembly of single-molecule sequencing reads (Nature Biotechnology)
- LUMPY: a probabilistic framework for structural variant discovery (Genome Biology)
- The Sequence Alignment/Map format and SAMtools (Bioinform.)
- MUSCLE: multiple sequence alignment with high accuracy and high throughput.
- Detecting DNA cytosine methylation using nanopore sequencing (Nature Methods)
- Nanopore sequencing and assembly of a human genome with ultra-long reads (Nature Biotechnology)
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding (Bioinform.)
Their papers
- Nanopore sequencing and assembly of a human genome with ultra-long reads (2017) — 1,714 citations
- A complete bacterial genome assembled de novo using only nanopore sequencing data (2015) — 1,217 citations
- Binning metagenomic contigs by coverage and composition (2014) — 2,352 citations
- Telomere-to-telomere assembly of a complete human X chromosome (2019) — 617 citations
- An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar (2018) — 985 citations
- Nanopore native RNA sequencing of a human poly(A) transcriptome (2018) — 631 citations
- Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study (2021) — 720 citations
- Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (2021) — 1,098 citations
- SARS-CoV-2 evolution during treatment of chronic infection (2021) — 955 citations
- Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore (2020) — 357 citations
- nCoV-2019 sequencing protocol v1 (2020) — 148 citations
- Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples (2017) — 1,104 citations
- Virus genomes reveal factors that spread and sustained the Ebola epidemic (2017) — 389 citations
- Establishment and cryptic transmission of Zika virus in Brazil and the Americas (2017) — 543 citations
- De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing (2017) — 306 citations
- Real-time, portable genome sequencing for Ebola surveillance (2016) — 1,345 citations