The many faces of the helix-turn-helix domain: transcription regulation and beyond.

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ECOD: An Evolutionary Classification of Protein Domains (2014, background): “However, SCOP tends to be conservative in assessing evolutionary relationships, and many homologous links reported in literature are not currently reflected [6,7,8,9,10,11].”
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world (2008, background): “The overwhelming majority of the DNAbinding domains are variations on the same structural theme, helix–turn–helix (113).”
COMPASS server for homology detection: improved statistical accuracy, speed and functionality (2009, background): “The 49-Gly-Ile-Asp-51 in T0473 is a very typical sequence for an HTH turn, and Ala44, four residues before Gly49, is a conserved small residue to make room for packing of the second HTH helix (37).”