mreps: efficient and flexible detection of tandem repeats in DNA

By Roman M. Kolpakov, Ghizlane Bana, Gregory Kucherov. Nucleic Acids Res., 2003

423 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/e69c0146e5313997b68f5e549d78d9eab0c04d87

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In Molecular Biology

1. Jaime Huerta-Cepas
2. Mario Stanke
3. Kim D. Pruitt
4. Donna R. Maglott
5. A. E. Douglas
6. Toni Gabaldón
7. J. McCutcheon
8. Françoise Thibaud-Nissen

Citations in the corpus

• MISA-web: a web server for microsatellite prediction (2017, background): “2013), IMEx (Mudunuri and Nagarajaram 2007), mreps (Kolpakov et al. 2003), ProGeRF (Lopes et al.”
• Genome Sequence of the Pea Aphid Acyrthosiphon pisum (2010, methodology): “This pipeline is composed of TE detection software—BLASTER [115], RepeatMasker [121], and Censor [122]—and satellite detection software—RepeatMasker, TRF [123], and Mreps [124].”
• Combined Evidence Annotation of Transposable Elements in Genome Sequences (2005, methodology): “Currently we employ RM to detect simple repeats, although refined parameter optimization may reveal that other more specialized simple repeat detection software, such as TRF [21], Mreps [22], or other methods (e.g., [27]) might be more appropriate.”