Improved Culturability of Soil Bacteria and Isolation in Pure Culture of Novel Members of the Divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia

By P. H. Janssen, P. Yates, Bronwyn E. Grinton, Paul M. Taylor, M. Sait. Applied and Environmental Microbiology, 2002

779 citations recorded by the source corpus.

Subfields: Ecology, Molecular Biology, Soil Science

View Paper: https://www.semanticscholar.org/paper/df01d4bda218e0c38ea45e559e04775bf59adc9a

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Citations in the corpus

The under-recognized dominance of Verrucomicrobia in soil bacterial communities (2011, background): “…across soils, as confirmed in other studies (Buckley and Schmidt, in maximum depth from 20 to 170 cm. Classes depicted on bar from left to right: 2001, 2003; Janssen et al., 2002; Janssen, 2006), with members of this phylum apparently most abundant in soils from grasslands and prairies (Fig.”
The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors (2009, background): “So far, only a few cultured Acidobacteria strains were recovered from bulk soils (Janssen et al. 2002).”
Developing a new resource for drug discovery: marine actinomycete bacteria (2006, background): “Though progress in accessing unique, soil-inhabiting actinomycetes is being reporte”
Microbial Diversity in Caves (2016, methodology): “Although recent studies, carried out using culturing techniques, allowed researchers to detect representatives of subgroups 1, 2, 3, 4 and 8 (Coates et al. 1999; Janssen et al. 2002; Joseph et al. 2003; Kishimoto et al. 1991; Liesack et al. 1994; Sait et al. 2002, 2006; Stevenson et al. 2004), most ”
Microbial diversity in soil: selection microbial populations by plant and soil type and implications for disease suppressiveness. (2004, background): “However, the shortcomings of these techniques and their related problems have also been well documented (62, 129).”
Impact of root exudates and plant defense signaling on bacterial communities in the rhizosphere. A review (2011, methodology): “Hence, culturable plating methods are still required (Nichols 2007) and further optimized (Janssen et al. 2002).”
Detection and Phylogenetic Relationships of Highly Diverse Uncultured Acidobacterial Communities in Altamira Cave Using 23S rRNA Sequence Analyses (2005, background): “…species, i.e., Acidobacterium capsulatum, Geothrix fermentans, and Holophaga foetida (Liesack et al. 1994; Kishimoto et al. 1991; Coates et al. 1999) as well as several recent 16S rDNA sequences from cultured cells (Janssen et al. 2002; Joseph et al. 2003; Sait et al. 2002; Stevenson et al. 2004).”
Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes (2006, background): “The major group of Verrucomicrobia found in soil is the class Spartobacteria (Table 4), which is the name proposed for subdivision 2 of Verrucomicrobia (97).”
Toward an ecological classification of soil bacteria. (2007, background): “…the culturability of Acidobacteria can be improved considerably if culturing methods are altered (by using long incubation periods and polymeric media) in order to favor the isolation of more oligotrophic bacteria (Janssen et al. 2002, Sait et al. 2002, Joseph et al. 2003, Stevenson et al. 2004).”
Metagenomics: genomic analysis of microbial communities. (2004, background): “(56, 99) have made tremendous advances in culturing members of the phylum, although all cultured members are from three of the eight groups.”