Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes

By P. H. Janssen. Applied and Environmental Microbiology, 2006

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Citations in the corpus

Atmospheric Movement of Microorganisms in Clouds of Desert Dust and Implications for Human Health (2007, background): “composition is determined by a number of factors, including pH, temperature, elemental composition, and nutrient and moisture content, members of other phyla also occur less frequently (67, 110).”
Loss in microbial diversity affects nitrogen cycling in soil (2013, background): “(2011) where many OTUs from the targeted denitrifiers were related to nosZ from Proteobacteria, commonly described as one of the dominant bacterium phylum in soil (Janssen, 2006; Nemergut et al., 2011).”
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses (2009, background): “Since then, further molecular surveys have revealed that Acidobacteria are ubiquitous and among the most abundant bacterial phyla in soil (Janssen, 2006).”
Soil microbial community structure and function relationships: A heat stress experiment (2015, background): “This could be explained by the fact that bacteria are often dominant in agricultural soils (Fierer et al., 2005; Janssen, 2006) and are more tolerant to heat than fungi (Allison and Treseder, 2008; Frey et al.”
A Patchwork of Streptomyces Species Isolated from Potato Common Scab Lesions in North America (2009, background): “Streptomyces species are ubiquitous and abundant in soils (Janssen 2006; Pierzynsk et al. 2005), and may be present at 10(6)organisms per cubic centimeter of soil.”
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes (2012, background): “S1), bacterial phyla that are known to be relatively abundant and ubiquitous in soil (25).”
The Effect of Tillage System and Crop Rotation on Soil Microbial Diversity and Composition in a Subtropical Acrisol (2012, background): “Janssen [31] identified Gemmatimonadetes as one of the top nine phyla found in soils comprising 2% of soil bacterial communities.”
Soil Microbial Community Responses to Multiple Experimental Climate Change Drivers (2009, background): “The bacterial 16S rRNA clone libraries revealed a great diversity of organisms present and a phylumlevel distribution similar to previously reported soil 16S rRNA clone libraries (27).”
Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils (2009, background): “Experiments with Pseudomonas aeruginosa indicate that the multicopper oxidase mco is a ferroxidase that functions in Fe(2) uptake (34).”
Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity (2008, neutral): “This subgroup of bacteria is diverse and ubiquitous in soils (19) and thought to play an important role in biogeochemical cycling (20).”
Diversity of rock varnish bacterial communities from Black Canyon, New Mexico (2010, neutral): “[Janssen, 2006].”