Molecular Evolution — A Phylogenetic Approach.

By M. Tristem. Heredity, 2000

813 citations recorded by the source corpus.

Subfields: History and Philosophy of Science

View Paper: https://www.semanticscholar.org/paper/ddd703f647499d25cd0972fc9f19dbf02907c67d

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In History and Philosophy of Science

Citations in the corpus

On the relationship between interindividual cultural transmission and population-level cultural diversity: a case study of weaving in Iranian tribal populations (2009, methodology): “The data were analyzed using the cladistic method of phylogenetic reconstruction (Kitching, Forey, Humphries, & Williams, 1998; Page & Holmes, 1998; Schuh, 2000).”
MEGA2: molecular evolutionary genetics analysis software (2001, positive): “MEGA2 can compute evolutionary distances based on the observed differences in amino acid and nucleotide sequences (reviewed in Nei and Kumar, 2000; Swofford et al., 1996; Page and Holmes, 1998 ).”
From house mouse to mouse house: the behavioural biology of free-living Mus musculus and its implications in the laboratory (2004, neutral): “Rodents have higher mutation rates than other mammalian orders (Page and Holmes, 1998).”
How useful are the genetic markers in attempts to understand and manage marine biodiversity (2002, methodology): “…population genetics and phylogenetics that can be applied to molecular data can be found in Futuyma (1986), Felsenstein (1988), Hartl and Clark (1989), Weir (1990), Avise (1994), Slatkin et al. (1995), Ferraris and Palumbi (1996), Hillis et al. (1996), Page and Holmes (1998), and Swofford (1999).”
Total evidence requires exclusion of phylogenetically misleading data (2005, background): “…or even similar trees for the same organisms using the different independent data sets is ‘vanishingly small for any reasonable number of species’ (Page & Holmes, 1998), as a consequence of the very large number of possible phylogenies: ‘If different data sets give us similar trees this gives…”
Molecular and other biological evidence supports the recognition of at least three species of brown kiwi (2003, methodology): “Bootstrap replicates were performed on all phylogenetic trees to measure sampling error (Page and Holmes 1998).”
Investigating cultural evolution through biological phylogenetic analyses of Turkmen textiles (2002, positive): “…using the method of reconstructing phylogenetic relationships that is currently favoured in biology—cladistics (Ax, 1987; Eldredge and Cracraft, 1980; Hennig, 1950, 1965, 1966; Kitching et al., 1998; Minelli, 1993; Page and Holmes, 1998; Quicke, 1993; Schuh, 2000; Wiley, 1981; Wiley et al., 1991).”
Nuclear markers reveal unexpected genetic variation and a Congolese-Nilotic origin of the Lake Victoria cichlid species flock (2003, background): “The null hypothesis was that this sum is zero (Page & Holmes 1998).”
Paraphyletic groups as natural units of biological classification (2010, neutral): “As has already been discussed, however, this is not often the case, and evolutionary trees may differ in their topology from the respective cladograms (e.g., Kitching & al., 1998: 15 ff.; Page & Holmes, 1998: 23–24) (Fig.”
Inferring Evolutionary Trees with PAUP* (2003, background): “To get from one island to the next, one must pass through at least one suboptimal tree (see Swofford et al., 1996; Page and Holmes, 1998).”
An explicit computation of the injective hull of certain finite metric spaces in terms of their associated Buneman complex (2002, background): “Indeed (see for instance [5, 12, 26, 37, 38, 39, 42 , 45, 51, 53]), there is good evidence to expect that the tight span, though not a tree itself, might still be \similar" enough to an actual tree so as to give some valuable”
Dating Lineages: Molecular and Paleontological Approaches to the Temporal Framework of Clades (2004, methodology): “The fit of a model to the data can be evaluated through hierarchical likelihood ratio tests (Page and Holmes 1998) applied to sequentially more complex nested models (e.g., Modeltest; Posada and Crandall 1998).”
DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. (2006, background): “Consensus sequences have numerous drawbacks in the context of phylogenetic reconstruction and study of molecular evolution (e.g., Page and Holmes, 1998), but they are of interest in evaluating the performance of DNA barcodes for diagnostic purposes .”
Efficiently mining frequent trees in a forest: algorithms and applications (2005, neutral): “This is an important task, since there are many algorithms for inferring phylogenies, and biologists are often interested in finding consensus subtrees (those shared by many trees) [27].”
PHYLOGENETIC POSITION OF TOXARIUM, A PENNATE‐LIKE LINEAGE WITHIN CENTRIC DIATOMS (BACILLARIOPHYCEAE) 1 (2003, background): “Such anomalously fast-evolving sequences not only tend to attract one another in phylogenies but also can affect topology in shorter clades (Swofford et al. 1996, Page and Holmes 1998, Wiens and Hollingsworth 2000).”
A critical branching process model for biodiversity (2004, background): “5.4 Extinct species Textbooks (e.g. [ 18 ] page 24) often say”