Inferring Evolutionary Trees with PAUP*
By James C. Wilgenbusch, David L. Swofford. Current Protocols in Bioinformatics, 2003
420 citations recorded by the source corpus.
Subfields: Genetics, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/73d4d0957d5b9592dafed4182f659229901220e4
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Genetics
- Ivica Letunic
- Peer Bork
- J. Matthijnssens
- M. Van Ranst
- Mustafizur Rahman
- Piet Maes
- Cecilie Bækkedal
- Peik Haugen
In Molecular Biology
- Ivica Letunic
- Peer Bork
- Hazel A. Barton
- J. Matthijnssens
- M. Van Ranst
- Mustafizur Rahman
- Piet Maes
- Tobias Doerks
Citations in the corpus
- Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy (2011, methodology): “iTOL works with two most commonly used phylogenetic tree formats, Newick and Nexus (8).”
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments (2019, methodology): “iTOL supports commonly used phylogenetic tree formats: Newick, Nexus (9) and phyloXML (10).”
- RotaC: A web-based tool for the complete genome classification of group A rotaviruses (2009, methodology): “In a second step, a distance matrix, based on pairwise alignments with the Needleman-Wunsch algorithm [8], and a phylogenetic tree based on the neighbor-joining algorithm using the Paup* software [9] are constructed and analyzed to identify the genotype of the query sequence by using the nucleotide ”
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees (2016, methodology): “Trees can be also exported in all supported field-specific plain text formats (e.g. Newick, Nexus or phyloXML).”
- Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation (2021, methodology): “iTOL supports commonly used phylogenetic tree formats such as Newick, Nexus (9) and phyloXML (10).”
- Bacterial Calcium Carbonate Precipitation in Cave Environments: A Function of Calcium Homeostasis (2010, methodology): “Distance and parsimonious phylograms were generated in PAUP* using a heuristic search (Wilgenbusch and Swofford 2003).”