KBase: The United States Department of Energy Systems Biology Knowledgebase

By Adam P. Arkin, R. Cottingham, Christopher S. Henry, N. Harris, Rick L. Stevens, S. Maslov, Paramvir S. Dehal, D. Ware, Fernando Pérez, S. Canon and 70 more. Nature Biotechnology, 2018

1,390 citations recorded by the source corpus.

Author(s): Arkin, Adam P; Cottingham, Robert W; Henry, Christopher S; Harris, Nomi L; Stevens, Rick L; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W; Henderson, Matthew L; Riehl, William J; Murphy-Olson, Dan; Chan, Stephen Y; Kamimura, Roy T; Kumari, Sunita; Drake, Meghan M; Brettin, Thomas S; Glass, Elizabeth M; Chivian, Dylan; Gunter, Dan; Weston, David J; Allen, Benjamin H; Baumohl, Jason; Best, Aaron A; Bowen, Ben; Brenner, Steven E; Bun, Christopher C; Chandonia, John-Marc; Chia, Jer-Ming; Colasanti, Ric; Conrad, Neal; Davis, James J; Davison, Brian H; DeJongh, Matthew; Devoid, Scott; Dietrich, Emily; Dubchak, Inna; Edirisinghe, Janaka N; Fang, Gang; Faria, Jose P; Frybarger, Paul M; Gerlach, Wolfgang; Gerstein, Mark; Greiner, Annette; Gurtowski, James; Haun, Holly L; He, Fei; Jain, Rashmi; Joachimiak, Marcin P; Keegan, Kevin P; Kondo, Shinnosuke; Kumar, Vivek; Land, Miriam L; Meyer, Folker; Mills, Marissa; Novichkov, Pavel S; Oh, Taeyun; Olsen, Gary J; Olson, Robert; Parrello, Bruce; Pasternak, Shiran; Pearson, Erik; Poon, Sarah S; Price, Gavin A; Ramakrishnan, Srividya; Ranjan, Priya; Ronald, Pamela C; Schatz, Michael C; Seaver, Samuel MD; Shukla, Maulik; Sutormin, Roman A; Syed, Mustafa H; Thomason, James; Tintle, Nathan L; Wang, Daifeng; Xia, Fangfang; Yoo, Hyunseung; Yoo, Shinjae; Yu, Dantong

Subfields: Health, Toxicology and Mutagenesis

View Paper: https://www.semanticscholar.org/paper/db93bf284e88f83cbc97770fe4c23bc57593c472

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Citations in the corpus

The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities (2020, background): “IMG is also forming collaborations with KBase (46) and National Microbiome Data Collaborative (NMDC) (47) for co-development of analysis tools and user interface.”
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses (2020, methodology): “Finally, as more tools and infrastructure are developed for viral ecogenomics (60,61), we plan to further integrate the IMG/VR database across different platforms including IMG, iVirus(61) and KBase (62), to broaden the scope of analyses that can be performed on these data and to make it easily acce”