Rapid and Simple Determination of theEscherichia coli Phylogenetic Group

By O. Clermont, S. Bonacorsi, É. Bingen. Applied and Environmental Microbiology, 2000

2,839 citations recorded by the source corpus.

Subfields: Endocrinology, Food Science, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/db80ef41570139d51ce089530245da37c04b5c6b

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Endocrinology

1. M. Nicolas-Chanoine
2. J. Madec
3. X. Bertrand
4. E. Denamur
5. J. Pitout
6. J. Ghigo

In Food Science

1. M. Nicolas-Chanoine
2. X. Bertrand
3. J. Madec
4. E. Denamur
5. M. Kogut
6. H. Lillehoj

In Molecular Biology

1. M. Nicolas-Chanoine
2. J. Madec
3. X. Bertrand
4. E. Denamur
5. Eduardo P. C. Rocha
6. J. Pitout
7. B. Oakley
8. Marie Touchon

Citations in the corpus

• Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum (2007, methodology): “coli phylogenetic groups (A, B1, B2 and D) (2, 3) were determined by triplex PCR (Clermont et al., 2000).”
• Escherichia coli ST131, an Intriguing Clonal Group (2014, methodology): “(47, 48), other single-nucleotide polymorphism (SNP)-based methods can be used to determine whether the isolate concerned belongs to the ST131 lineage.”
• The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. (2013, background): “coli strain could be assigned to one of the main phylo-groups, A, B1, B2 or D (Clermont et al., 2000).”
• Intercontinental emergence of Escherichia coli clone O25:H4-ST131 producing CTX-M-15. (2007, methodology): “coli phylogenetic group (A, B1, B2 and D) was done by multiplex PCR.(23)”
• ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping (2018, methodology): “One of the most popular is the triplex [11], becoming quadruplex in 2013 [5], Clermont PCR, which assigns E.”
• Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths (2009, background): “Population genetic studies based on both multi-locus enzyme electrophoresis [11–13] and various DNA markers [14–18] have identified four major phylogenetic groups (A, B1, D and B2) and a potential fifth group (E) among E.”
• Environmental Escherichia coli: ecology and public health implications—a review (2017, background): “Escherichia coli strains can be also classified into several phylogenetic groups: A, B1, B2 and D (Clermont et al. 2000).”
• The chicken gastrointestinal microbiome. (2014, background): “coli isolates that belong to the ECOR B2 group (Clermont et al., 2000; Ewers et al., 2007) and suggest some APECs could be zoonotic pathogens.”