PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

By P. Hornbeck, Indy S Chabra, J. Kornhauser, E. Skrzypek, Bin Zhang. Proteomics, 2004

586 citations recorded by the source corpus.

Subfields: Molecular Biology, Spectroscopy

View Paper: https://www.semanticscholar.org/paper/db5c742121d01d0fedd66dc33da0c1f5f38b2015

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Citations in the corpus

15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms (2018, background): “Information about experimentally observed PTMs, manually curated by expert scientists, includes upstream regulation by treatments, ligands, and enzymes, and downstream regulation of molecular, cellular and biological consequences controlled by the PTM (2).”
Phospho.ELM: a database of phosphorylation sites—update 2011 (2010, background): “Other bioinformatics resources also incorporate substantial phosphorylation data: more general ones are UniProt (26), HPRD (45), and PhosphoSitePlus (46).”
Biological sequence motif discovery using motif-x. (2011, methodology): “This data format is also becoming increasingly adopted by protein posttranslational modification databases (Hornbeck et al., 2004; Durek et al., 2010; Dinkel et al., 2011), as well as in the supplemental data of large-scale PTM studies (Matic et al., 2010; Rigbolt et al., 2011).”
A tissue-specific atlas of mouse protein phosphorylation and expression. (2010, unknown): “Importantly, over 50% of observed sites and phosphoproteins were previously unreported, based on comparison with the PhosphoSite database of known phosphorylation sites (Hornbeck et al., 2004) (Figure S3A).”
NetworKIN: a resource for exploring cellular phosphorylation networks (2007, background): “ELM (2), PhosphoSite (14) and STRING (12) databases.”
PHOSIDA 2011: the posttranslational modification database (2010, unknown): “ELM (12), PhosphoSite (13), HPRD (14) and dbPTM (15) are further comprehensive databases that contain phosphorylation sites from different projects.”
Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer. (2007, unknown): “When these sites were queried against PhosphoSite (www.phosphosite.org), a comprehensive resource of known phosphorylation sites (Hornbeck et al., 2004), more than 85% appeared novel.”
A highly conserved program of neuronal microexons is misregulated in autistic brains (2014, background): “, 2014); PhosphoSite (Hornbeck et al., 2004); Transmembrane predictions, TMHMM (Krogh et al.”
PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse (2011, background): “PhosphoSite (6), launched in 2003, was designed as a resource that would comprehensively aggregate information about the structure and regulatory interactions of phosphorylation sites.”
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites (2007, methodology): “Protein assignments are based on the IPI database [ 14 ], which is cross-referenced with the Swissprot database by PHOSIDA.”
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins (2016, unknown): “PhosphoSitePlus Phosphosite-Disease Associations (63, 64)”