PHOSIDA 2011: the posttranslational modification database
By Florian Gnad, Jeremy Gunawardena, Matthias Mann. Nucleic Acids Res., 2010
403 citations recorded by the source corpus.
The primary purpose of PHOSIDA (http://www.phosida.com) is to manage posttranslational modification sites of various species ranging from bacteria to human. Since its last report, PHOSIDA has grown significantly in size and evolved in scope. It comprises more than 80 000 phosphorylated, N-glycosylated or acetylated sites from nine different species. All sites are obtained from high-resolution mass spectrometric data using the same stringent quality criteria. One of the main distinguishing features of PHOSIDA is the provision of a wide range of analysis tools. PHOSIDA is comprised of three main components: the database environment, the prediction platform and the toolkit section. The database environment integrates and combines high-resolution proteomic data with multiple annotations. High-accuracy species-specific phosphorylation and acetylation site predictors, trained on the modification sites contained in PHOSIDA, allow the in silico determination of modified sites on any protein on the basis of the primary sequence. The toolkit section contains methods that search for sequence motif matches or identify de novo consensus, sequences from large scale data sets.
Subfields: Molecular Biology, Oncology, Spectroscopy
View Paper: https://www.semanticscholar.org/paper/3bee5cc2d0b6bfcd564158cd0cf1bd311dae68b7
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Molecular Biology
Citations in the corpus
- PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse (2011, background): “A fourth, PHOSIDA (10), was launched in the fall of 2006.”
- The Roles of Post-translational Modifications in the Context of Protein Interaction Networks (2015, background): “ELM [12], PhosphoGRID [60], PHOSIDA [13], HPRD [61], OglycBase [62], PhosPhAt [14], P3DB [63], PTMcode [11] as of 2014 April.”