A tissue-specific atlas of mouse protein phosphorylation and expression.

By Edward L. Huttlin, Mark P. Jedrychowski, Joshua E. Elias, Tapasree Goswami, R. Rad, S. Beausoleil, J. Villén, W. Haas, M. Sowa, Steven P. Gygi. Cell, 2010

1,765 citations recorded by the source corpus.

Subfields: Molecular Biology, Spectroscopy

View Paper: https://www.semanticscholar.org/paper/df95795876c84250119253e652b03a028f49cd5d

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Citations in the corpus

Identification of a Unique TGF-β Dependent Molecular and Functional Signature in Microglia (2013, positive): “Linear discrimination scores were used to assign probabilities to each MS 2 spectrum for being assigned correctly and these probabilities were further used to filter the dataset with an MS 2 spectra assignment FDR of smaller than a 1% at the protein level 58 .”
A novel non-canonical mechanism of regulation of MST3 (mammalian Sterile20-related kinase 3) (2012, neutral): “They also studied the FLAG–MST3(T172A) mutation since MST3(phosphoThr 172 ) has also been detected by proteomics approaches [44,47,48].”
Universal database search tool for proteomics (2014, methodology): “The blue, red, green and magenta paths represent spectral types of the data sets used in recent studies by Frese et al. 20 , Swaney et al. 1 , Huttlin et al. 21 and Starita et al. 22 , respectively.”
Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins (2012, background): “Significantly higher numbers of identified proteins were so far only achieved by combining multiple diverse cell lines or tissues in one analysis (11), or by investing weeks of measurement for single samples (12, 13).”
Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization (2013, methodology): “12,30,31 Localization of diGLY sites employed a modified version of the A-score algorithm 32 as described.”
Systematic and quantitative assessment of the ubiquitin modified proteome (2011, neutral): “Despite theseadvances, theoverall number ofmodificationsites is small in comparison to the extent of acetylation and phosphorylation (Choudhary et al., 2009; Huttlin et al., 2010; Olsen et al., 2010), and the extent to which ubiquitin overexpression affects the occupancy and specificity of ubiquityl”
Multidimensional proteomics for cell biology (2015, methodology): “Increasingly, PTM analysis has been combined with the analysis of other protein properties such as protein– protein interactions 9,93 , developmental stage 94 and tissue distribution 95 .”