Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

By S. Brenner, Maria Q. Johnson, J. Bridgham, G. Golda, D. Lloyd, David A. Johnson, Shujun J Luo, S. Mccurdy, M. Foy, Mark Ewan and 14 more. Nature Biotechnology, 2000

1,377 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/da02eb436cd38b659ffee193a7f0681f799a215a

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Citations in the corpus

DNA sequencing at 40: past, present and future (2017, positive): “A second strategy uses the specificity of DNA ligases to attach fluorescent oligonucleotides to templates in a sequence-dependent manner 41,43,47,48 .”
Advanced sequencing technologies: methods and goals (2004, neutral): “The achievable 16–20-bp read-lengths (which involve 4–5 cycles) are adequate for many purpose”
ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. (2004, methodology): “In addition to traditional sequencing techniques (SAGE), commercially available techniques such as massively parallel signature sequencing can sequence thousands of cDNA clones simultaneously and be used to sample an entire ChIP [48].”
Mapping and quantifying mammalian transcriptomes by RNA-Seq (2008, methodology): “and related methods such as massively parallel signature sequencing (MPSS”
Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. (2004, methodology): “Like serial analysis of gene expression (SAGE; Velculescu et al., 1995), MPSS (Brenner et al., 2000a,b) generates short sequence tags produced from a de®ned position within an mRNA, and the relative abundance of these tags in a given library represents a quantitative estimate of expression of that…”
Principles of Gene Manipulation and Genomics (2006, methodology): “This sequencing method was developed by Brenner et al. (2000) to enable them to undertake a global analysis of gene regulation.”
Applications of next-generation sequencing technologies in functional genomics. (2008, methodology): “Some key features of 5′-RATE are the tag length (∼80 bp), which is longer than that of LongSAGE and MPSS, and the ability to generate tags from the 5′ end, facilitating the identification of transcription start sites.”
Moderated statistical tests for assessing differences in tag abundance (2007, background): “They are sensitive technologies for measuring gene expression on a genomic scale, without the need for prior knowledge of the genome sequence.”
Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum (2011, methodology): “After reverse transcription into double strand cDNA for tag preparation according to the massively parallel signature sequencing protocol [123], it was sequenced with an Illumina technique.”
Gene Expression Profiling of Plants under Salt Stress (2011, methodology): “MPSS is used to obtain signature sequences for each cDNA clone (Brenner et al., 2000).”