A graphical user interface to the CCP4 program suite.

By E. Potterton, P. Briggs, M. Turkenburg, Eleanor J Dodson. 2003

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Overview of the CCP4 suite and current developments (2011, background): “1b; Potterton et al., 2003).”
BALBES: a molecular-replacement pipeline (2007, methodology): “This interface also forms the basis for the other two interfaces, the ccp4i (Potterton et al., 2003) interface, which allows the use of the tools available within ccp4i, and the web interface, which allows the use of tools developed for web browsers.”
Alteration of enzyme specificity by computational loop remodeling and design (2009, methodology): “Model building was performed by using the CCP4 suite of programs (42, 43), excluding a random 5% of the data for cross-validation.”
Daedalus: a robust, turnkey platform for rapid production of decigram quantities of active recombinant proteins in human cell lines using novel lentiviral vectors (2011, unknown): “Initial structure factor phase information was determined by molecular replacement, using the program PHASER (23) as a part of the CCP4i program suite (24).”
JLigand: a graphical tool for the CCP4 template-restraint library (2012, methodology): “Currently, the program Sketcher, which is part of the CCP4i interface (Potterton et al., 2003), is used as a graphical interface for LibCheck.”
A highly conserved program of neuronal microexons is misregulated in autistic brains (2014, methodology): “0 of the CCP4 structural analysis software package (Potterton et al., 2003); default parameters were used.”
High resolution X‐ray structures of mouse major urinary protein nasal isoform in complex with pheromones (2010, methodology): “Model building was performed using Coot.58 Validation and structure comparisons were accomplished using the CCP4 suite programs Procheck, LSQKAB, Areaimol, and Baverage.53 Cavity surfaces and volumes were calculated with SwissPDB Viewer (v4.”
Evaluating the usefulness of protein structure models for molecular replacement (2005, methodology): “…cases, screening for MR solutions with a large number of models might produce suitable solutions (Claude et al., 2004) and that modelling can be used to improve the initial model after initial MR solutions have been found (Collaborative Computational Project Number 4, 1994; Potterton et al., 2003).”