JLigand: a graphical tool for the CCP4 template-restraint library

By A. Lebedev, P. Young, M. Isupov, O. Moroz, A. Vagin, G. Murshudov. Acta Crystallographica Section D: Biological Crystallography, 2012

404 citations recorded by the source corpus.

The CCP4 template-restraint library defines restraints for biopolymers, their modifications and ligands that are used in macromolecular structure refinement. JLigand is a graphical editor for generating descriptions of new ligands and covalent linkages.

Subfields: Materials Chemistry, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/5f7b83940630b6d8c1e19b2faac01e5c403af8f6

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Materials Chemistry

1. Paul D. Adams
2. T. C. Terwilliger
3. Nigel W. Moriarty
4. Nathaniel Echols
5. Pavel V. Afonine
6. G. Murshudov
7. R. Nicholls
8. P. Emsley

In Molecular Biology

1. Paul D. Adams
2. T. C. Terwilliger
3. Nigel W. Moriarty
4. Nathaniel Echols
5. P. Emsley
6. G. Murshudov
7. R. Nicholls
8. F. Long

Citations in the corpus

• AceDRG: a stereochemical description generator for ligands (2017, background): “In future, programs such as JLigand (Lebedev et al. , 2012) and Lidia (Emsley et al. , 2010) will need to be adapted to make the program accessible to wider range of users.”
• Ligand placement based on prior structures: the guided ligand-replacement method (2013, methodology): “The first issue, ligand parameterization, has largely been addressed by current tools such as eLBOW/REEL (Moriarty et al., 2009), PRODRG (Schüttelkopf & van Aalten, 2004), grade (Smart et al., 2011) and JLigand (Lebedev et al., 2012).”