Regulation of chromatin by histone modifications

By Andrew J. Bannister, Tony Kouzarides. Cell Research, 2011

5,577 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/c22545181f31b39415a3faf7c9f20fdbe1b12364

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. Yang Shi
2. Makoto Nakakido
3. D. Reinberg
4. Ryuji Hamamoto
5. P. Voigt
6. Wee-Wei Tee
7. Ping Gao
8. Javad Zahiri

Citations in the corpus

• Post-translational modifications in proteins: resources, tools and prediction methods (2021, background): “Methylation is a reversible PTM, which often occurs in the cell nucleus and on the nuclear proteins such as histone proteins (1, 72).”
• Attend and Predict: Understanding Gene Regulation by Selective Attention on Chromatin (2017, background): “Unlike genetic mutations, chromatin changes such as histone modifications are potentially reversible ([5]).”
• DeepChrome: deep-learning for predicting gene expression from histone modifications (2016, neutral): “To simultaneously visualize the combinatorial interactions among histone modifications, we propose a novel optimization-based technique that generates feature pattern maps from the learnt deep model.”
• Metabolic reprogramming and epigenetic modifications on the path to cancer (2021, background): “This is especially true for the ε group of lysine, which can be acetylated, methylated, or ubiquitinated (Bannister and Kouzarides, 2011; Sadakierska-Chudy and Filip, 2015; Zheng et al., 2020), such as the balance between H3K9 acetylation and methylation (Nicolas et al., 2003), dynamic competition…”
• The LSD1 Family of Histone Demethylases and the Pumilio Posttranscriptional Repressor Function in a Complex Regulatory Feedback Loop (2015, background): “One such modification, the methylation of lysine residues on histone tails, is instrumental in regulating gene transcription and is required for development and tissue differentiation (3).”
• Metabolic Regulation of Gene Expression by Histone Lysine β-hydroxybutyrylation (2016, neutral): “The identified histone Kbhb sites include those lysine residues, such as H4K8, H4K12, H3K4, H3K9, H3K56, whose acetylation and methylation are important to chromatin structure and function (Bannister and Kouzarides, 2011).”
• Histone methylation: a dynamic mark in health, disease and inheritance (2012, background): “2 NUP98 t(8;11)(p11;p15) t(8;16)(p11;p13) Acute myeloid leukaemia, myelodysplastic syndrome”
• A double take on bivalent promoters. (2013, background): “The four core histones—H2A, H2B, H3, and H4—are subject to a host of covalent modifications, including methylation, acetylation, phosphorylation, and ubiquitination, among others (Vaquero et al. 2003; Campos and Reinberg 2009; Bannister and Kouzarides 2011).”
• Interpreting thelanguage of histone and DNA modifications (2014, background): “An astonishing number of PTMs, including lysine acetylation, lysine and arginine methylation, arginine citrullination, lysine ubiquitination, lysine sumoylation, ADP-ribosylation, proline isomerization, and serine/threonine/tyrosine phosphorylation occur on histones [11, 15] (Table 1).”
• The many faces and functions of β‐catenin (2012, neutral): “The transcriptional co-activators binding to b -catenin’s C-terminus are general initiators of transcription and are not b -catenin specific (Mosimann et al , 2009; Jaehning, 2010; Bannister and Kouzarides, 2011; Conaway and Conaway, 2011).”
• YTH Domain: A Family of N6-methyladenosine (m6A) Readers (2018, background): “It is well known that epigenetic marks on the nucleosome, including histone modifications and DNA methylation (5-methylcytosine), play important roles in gene regulation by mediating gene transcription events [2,3].”
• Gene regulation by the act of long non-coding RNA transcription (2013, background): “Transcriptional interference acting by promoter histone modifications Promoter associated nucleosomes carry post-translational histone tail modifications that reflect the activity state of the promoter and also influence accessibility of DNA binding factors involved in transcription [55].”
• Transcriptional Regulation and its Misregulation in Disease (2013, neutral): “…apparatus, and various chromatin regulators, leading to a present-day consensus model for selective gene control (Adelman and Lis, 2012; Bannister and Kouzarides, 2011; Bonasio et al., 2010; Conaway and Conaway, 2011; Fuda et al., 2009; Ho and Crabtree, 2010; Roeder, 2005; Spitz and…”