Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets.

By S. Persson, Hairong Wei, J. Milne, Grier P. Page, Chris Somerville. Proceedings of the National Academy of Sciences of the United States of America, 2005

629 citations recorded by the source corpus.

Subfields: Biomaterials, Biomedical Engineering, Plant Science

View Paper: https://www.semanticscholar.org/paper/c19322601c31212c78102f8206930aa13d6f1938

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Citations in the corpus

Metabolomics for functional genomics, systems biology, and biotechnology. (2010, methodology): “This approach was first applied for identifying genes involved in cellulose synthesis (146).”
Identification of Novel Genes in Arabidopsis Involved in Secondary Cell Wall Formation Using Expression Profiling and Reverse Genetics (2005, background): “Since completing this work, it has come to our attention that Chris Somerville and colleagues have analyzed publicly available data to identify genes that are coexpressed with secondary cell wall CesA genes (Persson et al., 2005).”
An Arabidopsis Gene Regulatory Network for Secondary Cell Wall Synthesis (2014, background): “(16 genes, 4 transcription factors); (2) supervised tier Ib, an additional three verified”
SND1, a NAC Domain Transcription Factor, Is a Key Regulator of Secondary Wall Synthesis in Fibers of Arabidopsis[W] (2006, background): “In addition, genomic analysis revealed a number of novel glycosyltransferases that might be involved in secondary wall synthesis (Aspeborg et al., 2005; Brown et al., 2005; Persson et al., 2005).”
Approaches for extracting practical information from gene co-expression networks in plant biology. (2007, methodology): “These databases provide results of large-scale correlation coefficient calculations using expression data from various experimental conditions (ranging from 123 to 2,620 arrays) deposited by international microarray consortiums such as AtGenExpress (Mirror site in Japan, http://pfg.psc. riken.jp/AtG”
Plant cell walls: the skeleton of the plant world (2010, methodology): “The IRX and PARVUS genes and their homologues in poplar and rice were all initially identified by correlative expression analyses using EST ormicroarray data aimed at identifying genes that function in secondary wall polysaccharide synthesis, including xylan (Aspeborg et al. 2005; Brown et al. 2005;”
Cellulose synthesis in the Arabidopsis secondary cell wall (2004, background): “The fact that KOR and IRX3 do not appear to associate, and the lack of colocalization between the two proteins, is hard to reconcile with the model proposed by ( Peng et al. 2002 ) in which the cellulose synthase complex would incorporate the sugars released by KOR into the growing cellulose chains.”
Plant Fiber Formation: State of the Art, Recent and Expected Progress, and Open Questions (2012, background): “Such a co-regulation between FLA and secondary cell wall-specific CesA genes is corroborated by the study of Persson et al. (2005), demonstrating in Arabidopsis the co-regulation of AtFLA11 and AtFLA12, the closest paralogues of poplar tension wood-specific FLAs, with secondary-wall-specific CesA…”