Arabidopsis Transcriptome Profiling Indicates That Multiple Regulatory Pathways Are Activated during Cold Acclimation in Addition to the CBF Cold Response Pathway Online version contains Web-only…

By Sarah G. Fowler, M. Thomashow. The Plant Cell Online, 2002

1,610 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/be9fbe2557ba8b332ec09b4f32d68f83f304b2b7

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Overview of Cold Stress Regulation in Plants (2021, background): “During cold stress, many signal transduction pathways have been identified which control COR gene expression and incorporate regulatory networks (Fowler & Thomashow 2002; Yamaguchi-Shinozaki & Shinozaki 2006; Thomashow 2010).”
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. (2007, background): “…effects on global gene expression in Arabidopsis and other plant species by several research groups (Brown et al., 2005; Chen et al., 2002; Desikan et al., 2001; Fowler and Thomashow, 2002; Hirai et al., 2004; Kreps et al., 2002; Rossel et al., 2002; Seki et al., 2001, 2002; Ulm et al., 2004).”
Genomics of Cold Hardiness in Woody Plants (2014, background): “The identification of genes that are activated by the CBFs has been accomplished by comparing microarray results of warmgrown plants with cold-grown plants or with plants that overexpress a CBF (Fowler and Thomashow, 2002; Maruyama et al., 2004).”
Role of Plant Transcription Factors in Abiotic Stress Tolerance (2011, background): “Extensive transcriptome analyses have divulged that these gene products can largely be classified into two groups (Bohnert et al., 2001; Seki et al., 2002; Fowler and Thomashow, 2002).”
Cold stress regulation of gene expression in plants. (2007, background): “Microarray analysis of transgenic Arabidopsis plants ectopically expressing CBFs revealed a constitutive expression of downstream cold-responsive transcription factor genes RAP2.1 and RAP2.7, which might control subregulons of the CBF regulon [ 24 ].”
Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway1 (2010, background): “These changes include up- and down-regulation of hundreds of genes occurring in waves with time of incubating plants at low temperature (Fowler and Thomashow, 2002; Maruyama et al., 2004; Hannah et al., 2005; Vogel et al., 2005; Oono et al., 2006; Kilian et al., 2007; Robinson and Parkin, 2008).”
Signal transduction during cold, salt, and drought stresses in plants (2011, background): “Microarray analysis has shown that CBFs regulate only about 12% of the cold-responsive transcriptome [57].”
ABA-mediated transcriptional regulation in response to osmotic stress in plants (2011, background): “6, have been identified as subregulons of the DREB/CBF activators (Fowler and Thomashow 2002).”
Down-Regulating α-Galactosidase Enhances Freezing Tolerance in Transgenic Petunia1 (2003, background): “Fowler and Thomashow (2002) reported that at least three putative GolS genes in Arabidopsis are members of the CBF regulon, whereas Taji et al. (2002) showed that one of these GolS (AtGolS3) was induced in response to low temperature and overexpression of CBF3/DREB1a.”
Temperature stress and plant sexual reproduction: uncovering the weakest links. (2010, background): “…by the thousands of transcriptional changes observed in seedlings, leaves, roots, and pollen as plants reprogramme cellular processes to adapt to hot or cold temperatures (Fowler and Thomashow, 2002; Kreps et al., 2002; Busch et al., 2005; Larkindale and Vierling, 2008; Frank et al., 2009).”
Freezing tolerance of plants: current understanding and selected emerging concepts (2003, background): “Other studies surveying up to 8100 genes and extrapolating the number of genes responsive to cold for the entire genome range from 1000 (Fowler and Thomashow 2002) to perhaps as high as 7000 genes (Kreps et al.”
Overexpression of AtMYB44 Enhances Stomatal Closure to Confer Abiotic Stress Tolerance in Transgenic Arabidopsis1[C][W][OA] (2007, background): “AtMYB44, AtMYB73, and AtMYB77 are induced by wounding (Cheong et al., 2002) and white-light treatment (Ma et al., 2005) and are transiently up-regulated by cold stress (Fowler and Thomashow, 2002).”
ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. (2003, background): “The CBF target genes presumably include some transcription factors (Fowler and Thomashow 2002).”