A novel hybrid gene prediction method employing protein multiple sequence alignments

By Oliver Keller, Martin Kollmar, Mario Stanke, Stephan Waack. Bioinform., 2011

539 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/b31c00d3d49abd642dd7dc1d99a8dc4c268af65a

How researchers see this paper

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In Molecular Biology

1. Mark Borodovsky
2. Alexandre Lomsadze
3. Tomás Bruna
4. Katharina Jasmin Hoff
5. Mario Stanke
6. Mosè Manni
7. Mathieu Seppey
8. E. Zdobnov

Citations in the corpus

• BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database (2020, methodology): “Table S11: Ab initio gene prediction accuracy of AUGUSTUS with i/ model parameters estimated on the training set generated by BRAKER2; and ii/ with model parameters estimated on a training set made from genes predicted by AUGUSTUS-PPX [2] with evidence from the BUSCO families processed via the BUSCO”
• BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics (2017, methodology): “BUSCO employs Augustus for gene so assessing genomes automatically generates Augustus-ready parameters trained on genes identified as complete.”