Effective Born radii in the generalized Born approximation: The importance of being perfect

By Alexey V. Onufriev, David A. Case, Donald Bashford. Journal of Computational Chemistry, 2002

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Exploring protein native states and large‐scale conformational changes with a modified generalized born model (2004, methodology): “although other other expressions have been tried.(13,25) The effective Born radius of an atom reflects the degree of its burial inside the molecule: For an isolated ion Ri is equal to its VDW radius i, while for a deeply buried one Ri i.”
Non-commercial Research and Educational Use including without Limitation Use in Instruction at Your Institution, Sending It to Specific Colleagues That You Know, and Providing a Copy to Your Institution's Administrator. All Other Uses, Reproduction and Distribution, including without Limitation Comm (2005, neutral): “Moreover, it should be noted that no assignments of individual transitions and subsequent leastsquares refinements are needed.”
Force fields for protein simulations. (2003, background): “A variety of functional forms for fGB have been tested (Onufriev et al., 2002), but the most common form chosen is (Still et al., 1990): fGBðrij ;R i ;R jÞ ¼ r 2ij þ R iR j exp r 2ij 4R iR j !"”