Force fields for protein simulations.

By Jay W. Ponder, David A. Case. 2003

1,680 citations recorded by the source corpus.

Subfields: Atomic and Molecular Physics, and Optics, Materials Chemistry, Molecular Biology

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In Atomic and Molecular Physics, and Optics

1. Robin Pearce
2. F. Long
3. Adrian E. Roitberg
4. Freddie R. Salsbury Jr.
5. Eszter Hazai
6. David Baker
7. S. McNicholas
8. Zsolt Bikádi

In Materials Chemistry

1. Robin Pearce
2. Yang Zhang
3. Chengxin Zhang
4. Yang Li
5. Wei Zheng
6. Eric W. Bell
7. G. Murshudov
8. David Baker

In Molecular Biology

1. Robin Pearce
2. Yang Zhang
3. Chengxin Zhang
4. Yang Li
5. Eric W. Bell
6. Wei Zheng
7. David Baker
8. A. Vagin

Citations in the corpus

• REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use. (2004, methodology): “All these values are generally re®ned using some semi-empirical energy function (see Ponder & Case, 2003; Brooks et al., 1983).”
• Comparison of multiple Amber force fields and development of improved protein backbone parameters (2006, background): “Equilibration was done in multiple steps, with positional restraints on all heavy atoms in the crystal structure gradually released from 2 to 0 kcal/mol Å.(2) The production run trajectories were 30 ns long.”
• DelPhi: a comprehensive suite for DelPhi software and associated resources (2012, methodology): “Currently, four widely used force fields are available in DelPhi package: AMBER98 [46], CHARMM22 [47], OPLS [48-50] and PARSE [51].”