UCSF ChimeraX: Meeting modern challenges in visualization and analysis

By Thomas D. Goddard, Conrad C. Huang, Elaine C. Meng, Eric F. Pettersen, Gregory S. Couch, J. H. Morris, T. Ferrin. 2018

4,690 citations recorded by the source corpus.

Subfields: Biophysics, Computer Graphics and Computer-Aided Design, Information Systems and Management, Molecular Biology, Computational Biology & Bioinformatics

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Biophysics

1. Gordon Wetzstein
2. Tanja Kortemme
3. Tero Karras
4. Leonidas J. Guibas
5. Yifan Cheng

In Computer Graphics and Computer-Aided Design

1. Gordon Wetzstein
2. Eric Chan
3. A. McCoy
4. Randy J. Read
5. Li-Wei Hung
6. Paul D. Adams
7. T. Ferrin
8. Koki Nagano

In Information Systems and Management

1. T. Ferrin
2. Maya Topf
3. Thomas D. Goddard
4. Conrad C. Huang
5. Eric F. Pettersen
6. Elaine C. Meng
7. Gregory S. Couch
8. Andriy Kryshtafovych

In Molecular Biology

1. Paul D. Adams
2. Randy J. Read
3. Pavel V. Afonine
4. T. Croll
5. T. C. Terwilliger
6. Nigel W. Moriarty
7. Andriy Kryshtafovych
8. Yang Zhang

In Computational Biology & Bioinformatics

1. Paul D. Adams
2. Yang Zhang
3. T. Ferrin
4. Randy J. Read
5. Thomas D. Goddard
6. Maya Topf
7. Pavel V. Afonine
8. Conrad C. Huang

Citations in the corpus

• Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix (2019, methodology): “(vi) ISOLDE (Croll, 2018) is a plugin to UCSF ChimeraX (Goddard et al., 2018) for improving low-resolution cryo-EM or crystal structures.”
• Structural basis of WLS/Evi-mediated Wnt transport and secretion (2020, methodology): “UCSF ChimeraX: Meeting modern challenges in visualization and analysis.”
• Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. (2020, positive): “The ORF9b-Tom70 complex model was submitted to the Namdinator web server ( 72 ) and further refined in ISOLDE 1.0 ( 73 ) using the plugin for UCSF ChimeraX ( 74 ).”
• Efficient Geometry-aware 3D Generative Adversarial Networks (2021, methodology): “[11] Terrance DeVries, Miguel Angel Bautista, Nitish Srivastava, Graham W.”
• Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms (2020, methodology): “py in pyem (Asarnow and Cheng, 2019), and illustrated using ChimeraX (Goddard et al., 2018).”
• Isotropic reconstruction for electron tomography with deep learning (2022, methodology): “UCSF ChimeraX 46 was used to visualize the resulting IsoNet-generated tomograms in their three dimensions.”