T. Ferrin
Molecular Biology · 2004–2023
A researcher in the Science corpus: 11 papers; trusts 18 researchers and is trusted by 27 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 124 citations into it; #1,878 of 17,773 by trust here, #657 by citations
- Materials Chemistry — 53 citations into it; #1,456 of 11,513 by trust here, #1,121 by citations
- Computational Biology & Bioinformatics — 49 citations into it; #284 of 660 by trust here, #56 by citations
- Artificial Intelligence — 5 citations into it
- Computational Chemistry & Drug Discovery — 5 citations into it; #218 of 425 by trust here, #17 by citations
Whom T. Ferrin trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Eric F. Pettersen
- Robert C. Edgar
- Weizhong Li
- Thomas D. Goddard
- Andrej Sali
- Stephen F. Altschul
- Robert D. Finn
- John P. Huelsenbeck
Who trusts T. Ferrin overall
Papers from T. Ferrin's perspective
Ordered by how strongly the researchers T. Ferrin trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- The Pfam protein families database
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- SCOP database in 2004: refinements integrate structure and sequence family data
- Amino acid substitution matrices from protein blocks.
- Highly accurate protein structure prediction with AlphaFold
- Identification of common molecular subsequences.
- Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.
- Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features
- Comparative protein modelling by satisfaction of spatial restraints.
Their papers
- UCSF Chimera—A visualization system for exploratory research and analysis (2004) — 43,944 citations
- Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop (2015) — 175 citations
- UCSF ChimeraX: Meeting modern challenges in visualization and analysis (2018) — 4,690 citations
- Visualizing density maps with UCSF Chimera. (2007) — 902 citations
- Tools for integrated sequence-structure analysis with UCSF Chimera (2006) — 704 citations
- UCSF Chimera, MODELLER, and IMP: an Integrated Modeling System (2011) — 626 citations
- clusterMaker: a multi-algorithm clustering plugin for Cytoscape (2011) — 613 citations
- Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies (2009) — 438 citations
- UCSF ChimeraX: Tools for structure building and analysis (2023) — 3,548 citations
- UCSF ChimeraX: Structure visualization for researchers, educators, and developers (2020) — 8,169 citations
- Engineering Cotton (+)-δ-Cadinene Synthase to an Altered Function: Germacrene D-4-ol Synthase (2006) — 87 citations