Maya Topf

Molecular Biology · 2011–2023

A researcher in the Science corpus: 13 papers; trusts 36 researchers and is trusted by 12 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 309 citations into it; #4,542 of 17,773 by trust here, #4,510 by citations
• Materials Chemistry — 189 citations into it; #4,222 of 11,513 by trust here, #4,939 by citations
• Computational Biology & Bioinformatics — 109 citations into it; #463 of 660 by trust here, #345 by citations
• Structural Biology — 65 citations into it; #57 of 224 by trust here, #130 by citations
• Computational Theory and Mathematics — 35 citations into it
• Spectroscopy — 32 citations into it
• Surfaces, Coatings and Films — 29 citations into it; #232 of 752 by trust here, #519 by citations
• Evaluation & Benchmarks — 20 citations into it; #2,360 of 3,147 by trust here, #1,290 by citations

Whom Maya Topf trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Adam T. Zemla
2. S. Parasuraman
3. Andriy Kryshtafovych
4. Yang Zhang
5. Eric F. Pettersen
6. Ilya A. Vakser
7. Thomas D. Goddard
8. Jeffrey Skolnick

Who trusts Maya Topf overall

1. Tom Burnley
2. Lisa N. Kinch
3. Agnel Praveen Joseph
4. Thomas Mulvaney
5. Andriy Kryshtafovych
6. J. Beton
7. Robin Pearce

Papers from Maya Topf's perspective

Ordered by how strongly the researchers Maya Topf trusts endorse each paper. Same corpus, a different order for every researcher.

1. UCSF Chimera—A visualization system for exploratory research and analysis
2. High-resolution structure of a retroviral protease folded as a monomer
3. TM-align: a protein structure alignment algorithm based on the TM-score
4. Announcing the worldwide Protein Data Bank
5. Statistical potential for assessment and prediction of protein structures
6. Phaser crystallographic software
7. LGA: a method for finding 3D similarities in protein structures
8. Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
9. MolProbity: all-atom structure validation for macromolecular crystallography
10. CAD‐score: A new contact area difference‐based function for evaluation of protein structural models

Their papers

• Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop (2015) — 175 citations
• Critical Assessment of Methods of Protein Structure Prediction (CASP) – Round XIII (2019) — 438 citations
• Assessment of three-dimensional RNA structure prediction in CASP15 (2023) — 146 citations
• Target highlights in CASP13: experimental target structures through the eyes of their authors (2019) — 11 citations
• Critical Assessment of Methods of Protein Structure Prediction (CASP) – Round XIV (2021) — 442 citations
• Improved metrics for comparing structures of macromolecular assemblies determined by 3D electron-microscopy (2017) — 51 citations
• Cryo-EM targets in CASP14 (2021) — 10 citations
• Cryo-EM targets in CASP13: overview and evaluation of results (2019) — 19 citations
• Scoring functions for cryoEM density fitting. (2011) — 76 citations
• New prediction categories in CASP15 (2023) — 53 citations
• CASP15 cryoEM protein and RNA targets: refinement and analysis using experimental maps (2023)
• Integrating model simulation tools and cryo‐electron microscopy (2022)
• TEMPy2: a Python library with improved 3D electron microscopy density-fitting and validation workflows (2021) — 29 citations