Identification of plasmids by PCR-based replicon typing.

By A. Carattoli, A. Bertini, L. Villa, V. Falbo, K. Hopkins, E. J. Threlfall. Journal of Microbiological Methods, 2005

2,353 citations recorded by the source corpus.

Subfields: Endocrinology, Food Science, Molecular Medicine

View Paper: https://www.semanticscholar.org/paper/95b3a5de3d7dc0e7dd02b23adfc4f946139ad27b

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Endocrinology

1. J. Pitout
2. P. Nordmann
3. L. Poirel
4. A. Carattoli
5. Amy Mathers
6. G. Peirano
7. R. Cantón
8. Teresa M. Coque

In Food Science

1. James Robertson
2. John H. E. Nash
3. A. Carattoli
4. P. Nordmann
5. L. Poirel

In Molecular Medicine

1. J. Pitout
2. L. Poirel
3. P. Nordmann
4. A. Carattoli
5. R. Cantón
6. Amy Mathers
7. G. Peirano
8. Teresa M. Coque

Citations in the corpus

• The CTX-M β-lactamase pandemic (2006, methodology): “PCR replicon typing assays have recently been used to identify plasmids bearing CTXM b-lactamase genes [13,16,39 ].”
• The Role of Epidemic Resistance Plasmids and International High-Risk Clones in the Spread of Multidrug-Resistant Enterobacteriaceae (2015, background): “This is referred to as the “incompatibility group typing” scheme, which is based on the characterization of unique or conserved replication areas on different plasmids and is used primarily to demonstrate the relatedness and behavior of different plasmid groups (178, 179).”
• In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing (2014, methodology): “Since 2005, a PCR-based replicon typing (PBRT) scheme has been available that targets in multiplex PCRs the replicons of the majorplasmidfamiliesoccurringinmembersofthefamily Enterobacteriaceae (2).”
• Resistance Plasmid Families in Enterobacteriaceae (2009, methodology): “Since 2005, a PCRbased replicon typing (PBRT) scheme has been available, targeting the replicons of the major plasmid families occurring in Enterobacteriaceae (HI2, HI1, I1- , X, L/M, N, FIA, FIB, FIC, W, Y, P, A/C, T, K, B/O) and also including PCR assays (FrepB and FIIAs PCRs), detecting the FII, ”
• Klebsiella pneumoniae: a major worldwide source and shuttle for antibiotic resistance (2017, methodology): “In early studies performing bacterial typing of the emergent K. pneumoniae ST258 clone, plasmid replicon type was not determined, becausemost K. pneumoniae plasmids were not typable by the standard PCR-based replicon typing method (Carattoli et al. 2005).”
• MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies (2018, positive): “Numerous typing schemes have been developed for plasmids [7, 11, 13] but replicon typing has served as the standard method for categorizing plasmids based on the DNA sequences responsible for replication of the plasmid [4, 7, 11, 14].”
• Dutch patients, retail chicken meat and poultry share the same ESBL genes, plasmids and strains. (2011, methodology): “All plasmids were characterized using PCRbased replicon typing (PBRT) [12,15].”
• Dissemination of Clonally Related Escherichia coli Strains Expressing Extended-Spectrum β-Lactamase CTX-M-15 (2008, methodology): “Plasmids were classifi ed according to their incompatibility group by a PCR-based replicon-typing scheme (29).”
• Carbapenemase-Producing Klebsiella pneumoniae, a Key Pathogen Set for Global Nosocomial Dominance (2015, neutral): “behavior of particular plasmid groups (74, 75).”