Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18

By Julian Parkhill, Gordon Dougan, K. James, N. Thomson, D. Pickard, J. Wain, C. Churcher, K. Mungall, Stephen D. Bentley, M. Holden and 31 more. Nature, 2001

1,265 citations recorded by the source corpus.

Subfields: Food Science, Genetics, Molecular Medicine

View Paper: https://www.semanticscholar.org/paper/9139d2dbb95f1f7decf4c660394285036aa76b87

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Citations in the corpus

Molecular basis of bacterial resistance to chloramphenicol and florfenicol. (2004, background): “Some of the aforementioned plasmids are conjugative [31,32] and thus can arrange their self-transfer to new host cells.”
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data (2011, methodology): “For example, HTS has been used to study transmission using a large number of isolates of a methicillin-resistant Staphylococcus aureus (MRSA) on both the global and local scale (Harris et al., 2010).”
Genomic analysis of bacteriophage ε34 of Salmonella enterica serovar Anatum (15+) (2008, neutral): “Genomic sequencing has shown that essentially all Salmonellae carry prophages [7-13].”
Microbial minimalism: genome reduction in bacterial pathogens. (2002, neutral): “Nature 413, 848–852. serovar Typhi (Parkhill et al., 2001).”
Increasing biological complexity is positively correlated with the relative genome-wide expansion of non-protein-coding DNA sequences (2003, neutral): “1 [84] Xylella fastidosa 0.12 2782 2679305 [85] Eschelichia coli 0157:H7 0.12 5447 5500000 [86] Eschelichia coli K-12 0.122 4288 4641000 [86] Salmonella enterica serovar Typhi CT18 0.124 4599 4809037 [87] Vibrio cholerae 0.1255 3885 4034065 [88] Lactococcus lactis sp. Lactis IL 0.126 2365589 2310 [8”
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons (2011, neutral): “CT18 AL513382 [36]”
Pathogenicity Islands in Bacterial Pathogenesis (2004, background): “Characterization of the resistance factors of such isolates led to the identification of a genomic island in multidrug-resistant strains of S. enterica serovars Typhimurium and Agona.”
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. (2009, positive): “Typhi CT18 annotation (Parkhill et al. 2001).”
Prophages and bacterial genomics: what have we learned so far? (2003, background): “…coli strains each carry between seven and 20 prophages (Blattner et al., 1997; Simpson et al., 2000; Hayashi et al., 2001a; McClelland et al., 2001; Parkhill et al., 2001a,b; Perna et al., 2001; Deng et al., 2002; Jin et al., 2002; Welch et al., 2002; Van Sluys et al., 2003), and the Shewanella…”