Simon R. Harris
Molecular Biology · 2011–2019
A researcher in the Science corpus: 12 papers; trusts 11 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 125 citations into it
- Genetics — 56 citations into it
- Plant Science — 25 citations into it
- Artificial Intelligence — 18 citations into it
- Ecology — 13 citations into it
- Paleontology — 12 citations into it
- Computational Biology & Bioinformatics — 9 citations into it
Whom Simon R. Harris trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Papers from Simon R. Harris's perspective
Ordered by how strongly the researchers Simon R. Harris trusts endorse each paper. Same corpus, a different order for every researcher.
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing (J. Comput. Biol.)
- The Sequence Alignment/Map format and SAMtools (Bioinform.)
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments (PLoS ONE)
- Mapping and quantifying mammalian transcriptomes by RNA-Seq (Nature Methods)
- MUSCLE: multiple sequence alignment with high accuracy and high throughput.
- ABySS: a parallel assembler for short read sequence data. (Genome Research)
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing (Nature Biotechnology)
- Trimmomatic: a flexible trimmer for Illumina sequence data (Bioinform.)
- Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
Their papers
- A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers (2012) — 2,057 citations
- SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments (2016) — 1,379 citations
- Phandango: an interactive viewer for bacterial population genomics (2017) — 566 citations
- Circlator: automated circularization of genome assemblies using long sequencing reads (2015) — 1,076 citations
- Fast and flexible bacterial genomic epidemiology with PopPUNK (2018) — 377 citations
- ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads (2017) — 619 citations
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins (2014) — 2,446 citations
- Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread (2019) — 678 citations
- Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak (2012) — 673 citations
- Emergence and global spread of epidemic healthcare-associated Clostridium difficile (2012) — 716 citations
- Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data (2011) — 1,162 citations
- Evidence for multiple waves of global transmission within the seventh cholera pandemic (2011) — 709 citations