PDBselect 1992–2009 and PDBfilter-select
By Sven Griep, Uwe Hobohm. 2009
119 citations recorded by the source corpus.
PDBselect (http://bioinfo.tg.fh-giessen.de/pdbselect/) is a list of representative protein chains with low mutual sequence identity selected from the protein data bank (PDB) to enable unbiased statistics. The list increased from 155 chains in 1992 to more than 4500 chains in 2009. PDBfilter-select is an online service to generate user-defined selections.
Subfields: Molecular Biology, Spectroscopy
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Molecular Biology
- Robbie P. Joosten
- Jesse D. Bloom
- G. Vriend
- Claudio Mirabello
- L. Gong
- Orr Ashenberg
- Elmar Krieger
- Gianluca Pollastri
In Spectroscopy
- Robbie P. Joosten
- Christopher Sander
- Claudio Mirabello
- G. Vriend
- Jesse D. Bloom
- Anastassis Perrakis
- G. Murshudov
Citations in the corpus
- A series of PDB related databases for everyday needs (2010, methodology): “PDBselect by Hobohm and Sander (45–47) provides a good example of methods to select a representative subset of the PDB and so do the PISCES 40) ends.”
- Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks (2014, methodology): “The dataset used to train and test the predictors is extracted from the October 2009 25% pdb_select list containing 4,818 proteins [56].”
- Mutational effects on stability are largely conserved during protein evolution (2013, background): “Griep S, Hobohm U (2010) PDBselect 1992-2009 and PDBfilter-select.”