daime, a novel image analysis program for microbial ecology and biofilm research.
By H. Daims, Sebastian Lücker, Michael Wagner. Environmental Microbiology, 2006
639 citations recorded by the source corpus.
Subfields: Ecology, Molecular Biology, Pollution
View Paper: https://www.semanticscholar.org/paper/82c6c0b7fef7500f878b171db5e86def8311f4ac
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Ecology
- Bernhard Fuchs
- R. Amann
- Victor Kunin
- Per Halkjær Nielsen
- Alla L. Lapidus
- K. Mavromatis
- Alex Copeland
- Michael Wagner
In Molecular Biology
- R. Amann
- Bernhard Fuchs
- Victor Kunin
- Alla L. Lapidus
- K. Mavromatis
- Alex Copeland
- J. Dupré
- Michael Wagner
In Pollution
- R. Amann
- Bernhard Fuchs
- Per Halkjær Nielsen
- H. Daims
- Michael Wagner
- Maureen A. O’Malley
- J. Dupré
- Philip Hugenholtz
Citations in the corpus
- Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques (2008, methodology): “This study combined confocal laser scanning microscopy with the quantification of spatial localization patterns by the recently developed image-analysis software daime (digital image analysis in microbial ecology”
- A Bioinformatician's Guide to Metagenomics (2008, methodology): “Fluorescently labeled cells can be quantified by microscopy either manually or with the aid of image analysis software (28) or in combination with flow cytometry (121).”
- Molecular tools in rhizosphere microbiology—from single-cell to whole-community analysis (2009, background): “Similarly, Dandurand et al. (1997) obtained detailed information on distributions of a Pseudomonas fluorescens biocontrol strain on young pea root surfaces.”
- probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007 (2006, background): “Numerous ribosomal RNA (rRNA)-targeted oligonucleotide probes have been developed and are widely employed in a variety of hybridization formats for identification (1–3), quantification (4) and physiological characterization (5) of cultivated and un-cultivated organisms in environmental, bioengineere”
- Size doesn’t matter: towards a more inclusive philosophy of biology (2007, background): “technologies that enable in situ observation at the cellular and subcellular level (Brehm-Stecher and Johnson 2004; Daims et al. 2006).”
- Chemical and physical methods for characterisation of biofilms (2007, background): “as dot blot, fluorescence in situ hybridisation (FISH), and green fluorescent protein (GFP), allows a quantification of the composition of a complex microbial community [103–105].”
- Critical review on biofilm methods (2017, background): “Daime is the fourth alternative (Daims et al., 2006), designed for presentation of the data and not dedicated to but capable of extracting quantitative data.”
- Complete nitrification by Nitrospira bacteria (2015, positive): “To determine the relative abundances of Nitrospira and AOB in WWTP VetMed by quantitative FISH, 20 confocal images of FISH probe signals were taken at random positions in the sample and analyzed as described elsewhere60 by using the digital image analysis software DAIME 61.”