A Bioinformatician's Guide to Metagenomics

458 citations recorded by the source corpus.

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads (2011, unknown): “Third approach (not de novo ) is the comparative genome analysis mapping reads or aligning contigs to the reference genomes [9, 3, 13].”
PhyloSift: phylogenetic analysis of genomes and metagenomes (2014, background): “Within-species genomic polymorphism presents an even greater challenge (Kunin et al., 2008).”
Chapter 12: Human Microbiome Analysis (2012, background): “viral, bacterial, or eukaryotic), lyse the cells (taking care not to lose DNA to native DNAses), isolate DNA, fragment it to a target length, and sequence the resulting fragments [55,56].”
Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples (2018, background): “However, the identification and removal of contaminant sequences can be challenging (Kunin et al. 2008).”
Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets (2011, background): “known reference sequences, and/or de novo assembly [2,10].”
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes (2013, unknown): “Sequence composition-independent binning [9].”