Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.

By A. Pauli, Eivind Valen, Michael F. Lin, Manuel Garber, Nadine L. Vastenhouw, J. Levin, Lin Fan, Albin Sandelin, Johannes Rinn, Aviv Regev and 1 more. Genome Research, 2012

775 citations recorded by the source corpus.

Subfields: Management, Monitoring, Policy and Law, Political Science and International Relations

View Paper: https://www.semanticscholar.org/paper/800cae516c15823448096e5341188eb53e446fdd

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Citations in the corpus

lincRNAs: Genomics, Evolution, and Mechanisms (2013, neutral): “have fewer exons, typically only 2–3 (Cabili et al., 2011; Derrien et al., 2012; Pauli et al., 2012).”
Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs (2012, background): “In this review, we will discuss a number of important topics regarding lncRNAs: (i) How many functional lncRNAs are transcribed in mammals?; (ii) Known biological functions of lncRNAs; (iii) How do lncRNAs exert their effects? And finally, (iv) What are the potential roles of lncRNAs in human diseas”
Spatial reconstruction of single-cell gene expression (2015, background): “Constructs cloned above as well as constructs for aplnrb 43 and ets2 (ref.”
Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution (2015, background): “Yet, no study has systematically applied single molecule RNA FISH to explore lncRNA localization and abundance from cDNA and RNA-seq catalogs, such as those in [9,33-38].”
Non-coding RNAs in Development and Disease: Background, Mechanisms, and Therapeutic Approaches. (2016, background): “Furthermore, unlike miRNAs, lncRNAs are relatively poorly conserved in terms of nucleotide sequence, even though they can be found in a broad range of species (96, 125, 220), including plants (256), yeast (111), prokaryotes (20), and viruses (227).”
Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs (2013, background): “To limit redundancy, in case of overlap of exons between transcripts of the two sets, only transcripts from Pauli et al. (2012) were kept.”
Studying and modelling dynamic biological processes using time-series gene expression data (2012, background): “Although most time-series gene expression data sets have been generated using microarrays and microarray analysis tools are currently more mature, over the past few years numerous time-series RNA-seq studies have been carried out 22–24 .”
Long noncoding RNAs: Cellular address codes in development and disease (2013, positive): “An extensive catalog of lncRNAs has recently been described available for several model organisms (Nam and Bartel, 2012; Pauli et al., 2012; Ulitsky et al., 2011), opening the door of a wide array of powerful techniques to be used in the in vivo study of lncRNAs that will complement the study of hum”
Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation (2014, methodology): “For zebrafish, lincRNAs from Ensembl (v73), as well as catalogs from Ulitsky et al , (2011) and Pauli et al , (2012), were used.”