Timing the ancestor of the HIV-1 pandemic strains.

By B. Korber, M. Muldoon, James Theiler, F. Gao, R. Gupta, A. Lapedes, B. Hahn, Steven Wolinsky, Tanmoy Bhattacharya. Science, 2000

1,095 citations recorded by the source corpus.

Subfields: Molecular Biology, Virology

View Paper: https://www.semanticscholar.org/paper/54ef4ef0f9037a6283da2125b70c37ef9eb9f2bb

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Citations in the corpus

The Hologenome Concept: Human, Animal and Plant Microbiota (2014, background): “It appears highly likely that chimpanzees were the source of HIV-1 and HIV-2 (Huet et al. 1990), and that the viruses at some point, probably during the late nineteenth or early twentieth century (Korber et al. 2000), crossed species from chimpanzees to humans.”
Performance of a divergence time estimation method under a probabilistic model of rate evolution. (2001, background): “The pioneering work of Sanderson was followed with Bayesian estimates of divergence times that were based on models of evolution of the rate of molecular evolution (Thorne, Kishino, and Painter 1998; Huelsenbeck, Larget, and Swofford 2000; Korber et al. 2000).”
The early spread and epidemic ignition of HIV-1 in human populations (2014, background): “Since the sequences for ZR59 only partly overlap the C2V3 alignment, we dealt with phylogenetic uncertainty by constraining ZR59 to be a sister lineage of subtype D (16, 25).”
Evidence of HIV-1 Adaptation to HLA-Restricted Immune Responses at a Population Level (2002, background): “Mechanism for coreceptor function in HIV-1.”
RECONSTRUCTING THE PHYLOGENY OF LEGUMES (LEGUMINOSAE): AN EARLY 21 ST CENTURY PERSPECTIVE (2003, background): “…of a diversity of taxa, such as metazoans (Wray et al., 1996), Hawaiian silverswords (Baldwin and Sanderson, 1998), pandemic HIV-1 viruses (Korber et al., 2000), and angiosperms (Sanderson and Doyle, 2001), including some legume groups (Wojciechowski et al., 1999; Lavin et al., 2001b;…”
The causes and consequences of HIV evolution (2004, result): “Application of these (and similar) methods have led to suggestions that the M group of HIV-1 originated in the 1930s, with a range of ∼10 years on either sid”
Evolutionary analysis of the dynamics of viral infectious disease (2009, methodology): “Viral sequences sampled at Nature Reviews | Genetics various times since the discovery of HIV in 1983 have been used to date the origin of the pandemic to the first half of the twentieth century 10, 15 and to pinpoint west-central Africa as its geographic source 14 .”
Complete Genomic Sequence of Human Coronavirus OC43: Molecular Clock Analysis Suggests a Relatively Recent Zoonotic Coronavirus Transmission Event (2005, background): “Molecular dating has frequently been used to investigate the origin of viral epidemics (31, 40, 48).”
Molecular taxonomy, origins and evolution of freshwater ascomycetes (2006, methodology): “This method has already been successfully used in the calibration of HIV virus (Korber et al., 2000).”
R8s: Inferring Absolute Rates of Molecular Evolution, Divergence times in the Absence of a Molecular Clock (2003, background): “First, the abundance of molecular sequence data has renewed interest in estimating divergence times (Korber et al., 2000; Wikstrom et al., 2001), but there is wide appreciation that such data typically show strong departures from a molecular clock.”
PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic change (2006, background): “In one significant example, the origin of the HIV pandemic was investigated by comparing the patristic distances of dated HIV gene sequences [5].”
Transmission cycles, host range, evolution and emergence of arboviral disease (2004, neutral): “gif" NDATA ITEM> ]> RNA viruses, including HI”