Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli

By R. Welch, V. Burland, Guy Plunkett, P. Redford, P. Roesch, David A. Rasko, E. Buckles, S. Liou, A. Boutin, J. Hackett and 9 more. Proceedings of the National Academy of Sciences of the United States of America, 2002

1,542 citations recorded by the source corpus.

Subfields: Endocrinology, Food Science, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/50d8ee88661fba542ba2014dc292da3334264da6

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Citations in the corpus

GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis (2013, background): “By combining these tools with a growing number of genomic sequences, several recent studies have provided evidence suggesting that bacterial genomes are actually mosaics that include genes shared by all isolates of a group of interest (core genome) as well as strainspecific/partially shared genes (8”
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii (2006, neutral): “Yes (CT025832) No No E. coli (65%) [ 63 ] arsH (1_817) Yes (CT025832) No No P. putida (72%) [64] arsR (1_813) Yes (CT025832) No No P. aeruginosa (67%) [62] Mercury resistance operon Mercury merA (1_621) Yes (CT025832) No A. calcoaceticus (100%) (93%) [24] S. typhi (100%) [50] merC (1_615) Yes (CT025”
Anti-virulence strategies to combat bacteria-mediated disease (2010, background): “The gene cluster encoding the P pilus is often found in multiple copies in particularly virulent isolates of UPE”
The Hologenome Concept: Human, Animal and Plant Microbiota (2014, background): “Even describing microbiota at the species level may be insufficient because different strains of the same species may show different phenotypic and genetic characteristics (Welch et al. 2002).”
Pathogenicity Islands in Bacterial Pathogenesis (2004, background): “gene encoding CNF-1: Whereas PAI IJ96 is integrated adjacent to pheV, PAI IIJ96 is integrated downstream of the pheU gene (25, 288, 343, 369).”
Ψ-Φ: Exploring the outer limits of bacterial pseudogenes (2004, background): “(Because Welch et al. [2002] provide no information about the mutations that led to the formation of the E.”
Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. (2011, background): “The problem is that the taxa recognized as species by bacterial systematics are extremely broadly defined, with enormous levels of divergence in physiology, genome content, and most importantly, ecology (Welch et al., 2002; Whittam & Bumbaugh, 2002; Tettelin et al., 2005; Lefébure & Stanhope, 2007; ”
Genomic islands in pathogenic and environmental microorganisms (2004, background): “However, the presence of variable chromosomal regions in these strains is a typical characteristic of GEIs that have already been described for pathogenic and non-pathogenic enterobacteri”
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons (2011, neutral): “coli CFT073 AE014075 [32]”
Bacterial Biofilms: Development, Dispersal, and Therapeutic Strategies in the Dawn of the Postantibiotic Era (2013, background): “UPEC harbor numerous CUP pili systems, which are differentially expressed and are presumed to facilitate adherence in a niche-specific manner (Welch et al. 2002; Chen et al. 2006, 2009; Hadjifrangiskou et al. 2011; Spurbeck et al. 2011).”
The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates (2008, background): “coli genome structure based on a comparison of three isolates (67).”