Efficient reconstruction of complex free energy landscapes by multiple walkers metadynamics.
By P. Raiteri, Alessandro Laio, Francesco Luigi Gervasio, Cristian Micheletti, Michele Parrinello. Journal of Physical Chemistry B, 2006
554 citations recorded by the source corpus.
Subfields: Condensed Matter Physics, Materials Chemistry, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/4e1df52c8d1d76d092fbd443a177a577cf2d3e41
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Condensed Matter Physics
- Cameron F. Abrams
- Giovanni Bussi
- Tony Lelièvre
- J'erome H'enin
- Omar Valsson
- Michael R. Shirts
- Lucie Delemotte
- Siewert-Jan Marrink
In Materials Chemistry
- Omar Valsson
- J'erome H'enin
- Tony Lelièvre
- Lucie Delemotte
- Michael R. Shirts
- Giovanni Bussi
- John E. Stone
- Zaida Luthey-Schulten
In Molecular Biology
- Cameron F. Abrams
- J'erome H'enin
- Christophe Chipot
- Tony Lelièvre
- Giovanni Bussi
- Michael R. Shirts
- Omar Valsson
- Lucie Delemotte
Citations in the corpus
- Enhanced Sampling in Molecular Dynamics Using Metadynamics, Replica-Exchange, and Temperature-Acceleration (2013, methodology): “Multiple simulations can also be used to allow for a quicker filling of the free-energy landscape [147].”
- Enhanced Sampling Methods for Molecular Dynamics Simulations [Article v1.0] (2022, background): “Multiple walkers metadynamics A way to reduce the wall-clock time for convergence and make a better usage of modern parallel HPC resources is to employ multiple walkers or replicas [146].”
- Scalable molecular dynamics on CPU and GPU architectures with NAMD. (2020, background): “118,119 While it is never possible to formally guarantee a complete ergodic sampling, multiple-walker (MW) strategies, e.g., MW-MtD 128 or MW-ABF, 104,105 are available to address this issue.”
- A combined activation mechanism for the glucagon receptor (2020, methodology): “The well-tempered metadynamics simulation was run in the multiple-walkers (60) scheme using 12 walkers at 300 K.”